RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CCDC138Q96M89 665 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 UPF3AQ9H1J1 476 aaKnown RBP7.07□□□□□ -1.28
USP40-202ENST00000409945 NUP62CLQ9H1M0 184 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 PXMP2Q9NR77 195 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 CDC23Q9UJX2 597 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 SNX14Q9Y5W7 946 aa7.07□□□□□ -1.28
USP40-202ENST00000409945 A0A1W2PPC1 479 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 PMS2P1A4D2B8 440 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 POM121BA6NF01 834 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 CPLX1O14810 134 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 ABHD16AO95870 558 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 GH1P01241 217 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 ASGR1P07306 291 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 MYCLP12524 364 aaPredicted RBP7.06□□□□□ -1.28
USP40-202ENST00000409945 RXRAP19793 462 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 RPS6KB1P23443 525 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 NAPAP54920 295 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 RPS16P62249 146 aaKnown RBP7.06□□□□□ -1.28
USP40-202ENST00000409945 ANKRD1Q15327 319 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 ELAVL1Q15717 326 aaKnown RBP7.06□□□□□ -1.28
USP40-202ENST00000409945 LRRC26Q2I0M4 334 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 SEPT14Q6ZU15 432 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 TMTC3Q6ZXV5 915 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 RUFY3Q7L099 469 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 FAM186BQ8IYM0 893 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 GIMAP8Q8ND71 665 aaPredicted RBP7.06□□□□□ -1.28
USP40-202ENST00000409945 NSUN7Q8NE18 718 aaKnown RBP7.06□□□□□ -1.28
USP40-202ENST00000409945 TFAP2CQ92754 450 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 CDHR1Q96JP9 859 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 KLHL32Q96NJ5 620 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 TAAR1Q96RJ0 339 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 CPPED1Q9BRF8 314 aaPredicted RBP7.06□□□□□ -1.28
USP40-202ENST00000409945 TM6SF1Q9BZW5 370 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 LRRC27Q9C0I9 530 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 PSTPIP2Q9H939 334 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 UPF2Q9HAU5 1272 aaKnown RBP7.06□□□□□ -1.28
USP40-202ENST00000409945 NLRC4Q9NPP4 1024 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 ST6GALNAC1Q9NSC7 600 aaPredicted RBP7.06□□□□□ -1.28
USP40-202ENST00000409945 SACM1LQ9NTJ5 587 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 GPRC5BQ9NZH0 403 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 ZMYND8Q9ULU4 1186 aaPredicted RBP7.06□□□□□ -1.28
USP40-202ENST00000409945 SMCHD1A6NHR9 2005 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 CEP290O15078 2479 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 MCM3APO60318 1980 aa7.06□□□□□ -1.28
USP40-202ENST00000409945 B5MCH6 92 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 AGFG2O95081 481 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 FOSP01100 380 aaPredicted RBP7.05□□□□□ -1.28
USP40-202ENST00000409945 FTH1P19P0C7X4 201 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 TGFB3P10600 412 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 CHN2P52757 468 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 HTRA4P83105 476 aaPredicted RBP7.05□□□□□ -1.28
USP40-202ENST00000409945 GHRHRQ02643 423 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 CTBP1Q13363 440 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 ADCK5Q3MIX3 580 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 NOMO2Q5JPE7 1267 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 EMC10Q5UCC4 262 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 TAPT1Q6NXT6 567 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 ERAP2Q6P179 960 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 ZNF365Q70YC5 407 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 KLHDC9Q8NEP7 349 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 OR52N2Q8NGI0 321 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 BORCS6Q96GS4 357 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 TOX2Q96NM4 488 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 WWC2-AS2Q96NR7 200 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 TEX101Q9BY14 249 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 SEC61A2Q9H9S3 476 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 SARS2Q9NP81 518 aaKnown RBP7.05□□□□□ -1.28
USP40-202ENST00000409945 PIH1D1Q9NWS0 290 aaKnown RBP7.05□□□□□ -1.28
USP40-202ENST00000409945 MKI67P46013 3256 aaKnown RBP7.05□□□□□ -1.28
USP40-202ENST00000409945 ZNF785A8K8V0 405 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 CYTH3O43739 400 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 CDKL5O76039 1030 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 ARIH2O95376 493 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 PLEKHA8P1O95397 391 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 CLTBP09497 229 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 SUPT20HL2P0C7V6 817 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 XBP1P17861 261 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 ABCB4P21439 1286 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 GNA11P29992 359 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 HOXA13P31271 388 aaPredicted RBP7.05□□□□□ -1.28
USP40-202ENST00000409945 PMS2P11Q13670 270 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 TRIM60Q495X7 471 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 METRNLQ641Q3 311 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 FBXL16Q8N461 479 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 SRBD1Q8N5C6 995 aaKnown RBP7.05□□□□□ -1.28
USP40-202ENST00000409945 CCDC148Q8NFR7 591 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 BICD2Q8TD16 824 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 LRIG1Q96JA1 1093 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 TNIP3Q96KP6 325 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 TCEANC2Q96MN5 208 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 MTG1Q9BT17 334 aaPredicted RBP7.05□□□□□ -1.28
USP40-202ENST00000409945 KATNAL1Q9BW62 490 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 MLXIPQ9HAP2 919 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 KIAA1586Q9HCI6 787 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 PDGFCQ9NRA1 345 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 SIDT1Q9NXL6 827 aaKnown RBP7.05□□□□□ -1.28
USP40-202ENST00000409945 JKAMPQ9P055 326 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 MED16Q9Y2X0 877 aa7.05□□□□□ -1.28
USP40-202ENST00000409945 C11orf97A0A1B0GVM6 126 aaPredicted RBP7.04□□□□□ -1.28
USP40-202ENST00000409945 BTN3A1O00481 513 aa7.04□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms