RNA–Protein interactions for RNA: ENST00000409251.7

PTPRN-202, Transcript of protein tyrosine phosphatase, receptor type N, humanhuman

TSL 1 (best) BASIC

Gene PTPRN, Length 3,622 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRN-202ENST00000409251 PRKD1Q15139 912 aaPredicted RBP13.33□□□□□ -0.27
PTPRN-202ENST00000409251 PDSS2Q86YH6 399 aa13.33□□□□□ -0.27
PTPRN-202ENST00000409251 DOCK3Q8IZD9 2030 aa13.33□□□□□ -0.27
PTPRN-202ENST00000409251 TJP2Q9UDY2 1190 aa13.33□□□□□ -0.27
PTPRN-202ENST00000409251 ABT1Q9ULW3 272 aaKnown RBP13.33□□□□□ -0.27
PTPRN-202ENST00000409251 PCDHB2Q9Y5E7 798 aa13.33□□□□□ -0.27
PTPRN-202ENST00000409251 EVPLQ92817 2033 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 MYPNQ86TC9 1320 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 PHIPQ8WWQ0 1821 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 TRIM43BA6NCK2 446 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 H3BRB1 525 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 AMHP03971 560 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 FDFT1P37268 417 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 NAMPTP43490 491 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 ENTPD1P49961 510 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 GTF2A2P52657 109 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 HDAC4P56524 1084 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 FASTKD1Q53R41 847 aaKnown RBP13.33□□□□□ -0.28
PTPRN-202ENST00000409251 CYP2R1Q6VVX0 501 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 PCGF5Q86SE9 256 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 CLVS1Q8IUQ0 354 aaPredicted RBP13.33□□□□□ -0.28
PTPRN-202ENST00000409251 SLC9A9Q8IVB4 645 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 KIAA0319LQ8IZA0 1049 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 PHTF2Q8N3S3 785 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 OR6J1Q8NGC5 347 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 GABPB2Q8TAK5 448 aaPredicted RBP13.33□□□□□ -0.28
PTPRN-202ENST00000409251 NPLOC4Q8TAT6 608 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 THAP11Q96EK4 314 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 CDRT15Q96T59 188 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 ACSS3Q9H6R3 686 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 SEPT10Q9P0V9 454 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 POMPQ9Y244 141 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 NFASCO94856 1347 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 ARHGAP10A1A4S6 786 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 ZC3H11AO75152 810 aaKnown RBP eCLIP13.33□□□□□ -0.28
PTPRN-202ENST00000409251 TRMUO75648 421 aaKnown RBP13.33□□□□□ -0.28
PTPRN-202ENST00000409251 CA8P35219 290 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 PGGT1BP53609 377 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 CCNA1P78396 465 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 RARS2Q5T160 578 aaKnown RBP13.33□□□□□ -0.28
PTPRN-202ENST00000409251 TMC7Q7Z402 723 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 SAMD3Q8N6K7 520 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 OSMRQ99650 979 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 USP29Q9HBJ7 922 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 PSME4Q14997 1843 aa13.33□□□□□ -0.28
PTPRN-202ENST00000409251 SYNJ2BP-COX16A0A087WUM0 186 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.32□□□□□ -0.28
PTPRN-202ENST00000409251 GIPC1O14908 333 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 VNN1O95497 513 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 TSPY1Q01534 308 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 ITGA9Q13797 1035 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 TFDP3Q5H9I0 405 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 EFHC2Q5JST6 749 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 LGSNQ5TDP6 509 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 ATF7IP2Q5U623 682 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 TRMT10BQ6PF06 316 aaKnown RBP13.32□□□□□ -0.28
PTPRN-202ENST00000409251 KLHL35Q6PF15 583 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 EXD1Q8NHP7 514 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 C20orf96Q9NUD7 363 aaPredicted RBP13.32□□□□□ -0.28
PTPRN-202ENST00000409251 ZNF358Q9NW07 568 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 COX16Q9P0S2 106 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 CDH22Q9UJ99 828 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 A0A0B4J269 797 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 FKBP6O75344 327 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 TCEA3O75764 348 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 HSPA4LO95757 839 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 SNRPAP09012 282 aaKnown RBP13.32□□□□□ -0.28
PTPRN-202ENST00000409251 CTSHP09668 335 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 CDK4P11802 303 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 ARL2P36404 184 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 MLH1P40692 756 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 CARTPTQ16568 116 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 ANKDD1AQ495B1 522 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 PABPC1LQ4VXU2 614 aaKnown RBP13.32□□□□□ -0.28
PTPRN-202ENST00000409251 SPDYAQ5MJ70 313 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 PDPK2PQ6A1A2 396 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 USP37Q86T82 979 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 MYO1HQ8N1T3 1032 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 RDM1Q8NG50 284 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 DCAKDQ8WVC6 231 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 TLE6Q9H808 572 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 PDLIM7Q9NR12 457 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 ARHGEF4Q9NR80 690 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 GNEQ9Y223 722 aaKnown RBP13.32□□□□□ -0.28
PTPRN-202ENST00000409251 MYO18AQ92614 2054 aaKnown RBP13.32□□□□□ -0.28
PTPRN-202ENST00000409251 A0A088AWK7 358 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 ABHD2P08910 425 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 PABPC4LP0CB38 370 aaKnown RBP13.32□□□□□ -0.28
PTPRN-202ENST00000409251 RFX1P22670 979 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 CRABP2P29373 138 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 GHRHRQ02643 423 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 PPM1LQ5SGD2 360 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 C6orf183Q5T699 404 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 FOXR2Q6PJQ5 311 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 RNF111Q6ZNA4 994 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 FRMD7Q6ZUT3 714 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 ZNF554Q86TJ5 538 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 RCOR2Q8IZ40 523 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 VTI1AQ96AJ9 217 aa13.32□□□□□ -0.28
PTPRN-202ENST00000409251 MRPL4Q9BYD3 311 aaKnown RBP13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms