RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 SHOC2Q9UQ13 582 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 PKP3Q9Y446 797 aa9.36□□□□□ -0.91
LIG4-202ENST00000405925 hCG_1818297A0A087WSY0 165 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 TRAV19A0A0A6YYK7 116 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 A0A0G2JND7 137 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 KIF3CO14782 793 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 OPHN1O60890 802 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 LCA5LO95447 670 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 CFHP08603 1231 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 SP100P23497 879 aaPredicted RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 SPRP35270 261 aaPredicted RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 ADRA1BP35368 520 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 FPGSQ05932 587 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 LAMB3Q13751 1172 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 ARHGAP17Q68EM7 881 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 CNKSR3Q6P9H4 555 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 STRADAQ7RTN6 431 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 CRLF3Q8IUI8 442 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 ZC3H3Q8IXZ2 948 aaKnown RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 DQX1Q8TE96 717 aaKnown RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 FAXDC2Q96IV6 333 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 SEMA4AQ9H3S1 761 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 TLE6Q9H808 572 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP9.35□□□□□ -0.91
LIG4-202ENST00000405925 SLC25A13Q9UJS0 675 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 PLA2G4CQ9UP65 541 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 SBF2Q86WG5 1849 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 RASSF10A6NK89 507 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 DNALI1O14645 258 aaPredicted RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 GPR32O75388 356 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 UNGP13051 313 aaPredicted RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 TPH1P17752 444 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 GPD2P43304 727 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 RASSF2P50749 326 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 ZNF135P52742 658 aaPredicted RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 POU6F1Q14863 301 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 CES5AQ6NT32 575 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 RFX8Q6ZV50 586 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 WDR75Q8IWA0 830 aaKnown RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 FBXO22Q8NEZ5 403 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 BORCS6Q96GS4 357 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 ZNF670Q9BS34 389 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 FAM124BQ9H5Z6 455 aaPredicted RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 SCUBE2Q9NQ36 999 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 LATS2Q9NRM7 1088 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 ABHD14A-ACY1A0A1B0GW23 586 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 MEIS3P2A8K0S8 358 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 CHRNA1P02708 482 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 SNRPAP09012 282 aaKnown RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 ETS1P14921 441 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 GATMP50440 423 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 GUCY1A3Q02108 690 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 MTA1Q13330 715 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 SDE2Q6IQ49 451 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 LRIG3Q6UXM1 1119 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 AGMOQ6ZNB7 445 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 PRUNE1Q86TP1 453 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 ARHGAP24Q8N264 748 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 MAB21L3Q8N8X9 362 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 CALML6Q8TD86 181 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 ELMO2Q96JJ3 720 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 NAT9Q9BTE0 207 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 LRRC40Q9H9A6 602 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 PCDH18Q9HCL0 1135 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 GTSE1Q9NYZ3 720 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 STK38LQ9Y2H1 464 aa9.35□□□□□ -0.91
LIG4-202ENST00000405925 DDX60LQ5H9U9 1706 aaKnown RBP9.35□□□□□ -0.91
LIG4-202ENST00000405925 ARAP2Q8WZ64 1704 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 YJEFN3A6XGL0 299 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 TRIM49D1C9J1S8 452 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 E7ENQ6 273 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 CSF2RAP15509 400 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 HOXA11P31270 313 aaPredicted RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 SERPINB9P50453 376 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 AMPD2Q01433 879 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 SCAMP5Q8TAC9 235 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 FNIP1Q8TF40 1166 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 CLEC4CQ8WTT0 213 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 STK32AQ8WU08 396 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 AUTS2Q8WXX7 1259 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 RHOBTB2Q9BYZ6 727 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 MPP6Q9NZW5 540 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 DCTN4Q9UJW0 460 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 SLC39A10Q9ULF5 831 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 MYH11P35749 1972 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 MBLAC1A4D2B0 266 aaPredicted RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 TULP2O00295 520 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 FGF10O15520 208 aaPredicted RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 IQCF3P0C7M6 154 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 H2AFXP16104 143 aaPredicted RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 DAOAP59103 153 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 STX1BP61266 288 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 PDAP1Q13442 181 aaKnown RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 SLC45A4Q5BKX6 768 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 PSRC1Q6PGN9 363 aaPredicted RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 IFNLR1Q8IU57 520 aaPredicted RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 USP13Q92995 863 aaPredicted RBP9.34□□□□□ -0.91
LIG4-202ENST00000405925 SUSD3Q96L08 255 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 LGMNQ99538 433 aa9.34□□□□□ -0.91
LIG4-202ENST00000405925 SDCBP2Q9H190 292 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms