RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 HAPLN3Q96S86 360 aa30.4■■■□□ 2.46
USP42-202ENST00000404008 PRMT1Q99873 361 aaKnown RBP30.4■■■□□ 2.46
USP42-202ENST00000404008 DDX50Q9BQ39 737 aaKnown RBP30.4■■■□□ 2.46
USP42-202ENST00000404008 HS3ST4Q9Y661 456 aa30.4■■■□□ 2.46
USP42-202ENST00000404008 DUSP10Q9Y6W6 482 aa30.4■■■□□ 2.46
USP42-202ENST00000404008 TTC28Q96AY4 2481 aa30.39■■■□□ 2.46
USP42-202ENST00000404008 KIAA1549LQ6ZVL6 1849 aa30.39■■■□□ 2.46
USP42-202ENST00000404008 A0A0U1RQJ8 604 aa30.39■■■□□ 2.45
USP42-202ENST00000404008 PCK1P35558 622 aa30.39■■■□□ 2.45
USP42-202ENST00000404008 ZXDAP98168 799 aa30.39■■■□□ 2.45
USP42-202ENST00000404008 IER5LQ5T953 404 aa30.39■■■□□ 2.45
USP42-202ENST00000404008 RAP1GAP2Q684P5 730 aa30.39■■■□□ 2.45
USP42-202ENST00000404008 TPGS1Q6ZTW0 290 aa30.39■■■□□ 2.45
USP42-202ENST00000404008 ATRIPQ8WXE1 791 aa30.39■■■□□ 2.45
USP42-202ENST00000404008 HEBP1Q9NRV9 189 aa30.39■■■□□ 2.45
USP42-202ENST00000404008 MARK1Q9P0L2 795 aa30.39■■■□□ 2.45
USP42-202ENST00000404008 SALL4Q9UJQ4 1053 aa30.39■■■□□ 2.45
USP42-202ENST00000404008 MIA3Q5JRA6 1907 aa30.38■■■□□ 2.45
USP42-202ENST00000404008 TRDMT1O14717 391 aaKnown RBP30.38■■■□□ 2.45
USP42-202ENST00000404008 MIPP30301 263 aa30.38■■■□□ 2.45
USP42-202ENST00000404008 MAN1A1P33908 653 aa30.38■■■□□ 2.45
USP42-202ENST00000404008 NOP2P46087 812 aaKnown RBP30.38■■■□□ 2.45
USP42-202ENST00000404008 SCAPQ12770 1279 aa30.38■■■□□ 2.45
USP42-202ENST00000404008 KIF5AQ12840 1032 aa30.38■■■□□ 2.45
USP42-202ENST00000404008 NR1H3Q13133 447 aa30.38■■■□□ 2.45
USP42-202ENST00000404008 RFWD3Q6PCD5 774 aa30.38■■■□□ 2.45
USP42-202ENST00000404008 CHSY1Q86X52 802 aa30.38■■■□□ 2.45
USP42-202ENST00000404008 P2RY11Q96G91 374 aa30.38■■■□□ 2.45
USP42-202ENST00000404008 IRX2Q9BZI1 471 aaPredicted RBP30.38■■■□□ 2.45
USP42-202ENST00000404008 WNT16Q9UBV4 365 aa30.38■■■□□ 2.45
USP42-202ENST00000404008 DCXO43602 365 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 CCDC175P0C221 793 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 ADH5P11766 374 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 TACR2P21452 398 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 AIF1P55008 147 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 MLLT6P55198 1093 aaPredicted RBP30.37■■■□□ 2.45
USP42-202ENST00000404008 MESDQ14696 234 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 ACBD5Q5T8D3 534 aaPredicted RBP30.37■■■□□ 2.45
USP42-202ENST00000404008 SLFN11Q7Z7L1 901 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 C1orf74Q96LT6 269 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 PEBP4Q96S96 227 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 SIK2Q9H0K1 926 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 PCSK1NQ9UHG2 260 aa30.37■■■□□ 2.45
USP42-202ENST00000404008 HOXC11O43248 304 aaPredicted RBP30.36■■■□□ 2.45
USP42-202ENST00000404008 TSPAN3O60637 253 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 GJA4P35212 333 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 GAD2Q05329 585 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 GAB4Q2WGN9 574 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 ANO4Q32M45 955 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 SLC44A4Q53GD3 710 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 CYP4V2Q6ZWL3 525 aaPredicted RBP30.36■■■□□ 2.45
USP42-202ENST00000404008 CPNE8Q86YQ8 564 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 CHFRQ96EP1 664 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 MYEOVQ96EZ4 313 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 PRICKLE1Q96MT3 831 aaPredicted RBP30.36■■■□□ 2.45
USP42-202ENST00000404008 BBS2Q9BXC9 721 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 FZD10Q9ULW2 581 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 USP18Q9UMW8 372 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 PIAS3Q9Y6X2 628 aa30.36■■■□□ 2.45
USP42-202ENST00000404008 TMEM110-MUSTN1A8MSY1 372 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 PRPSAP2O60256 369 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 GLULP15104 373 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 TCF4P15884 667 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 GGCXP38435 758 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 SOX9P48436 509 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 SGSHP51688 502 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 AUHQ13825 339 aaKnown RBP30.35■■■□□ 2.45
USP42-202ENST00000404008 MPPE1Q53F39 396 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 FYB2Q5VWT5 728 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 CALR3Q96L12 384 aaKnown RBP30.35■■■□□ 2.45
USP42-202ENST00000404008 C8orf33Q9H7E9 229 aaPredicted RBP30.35■■■□□ 2.45
USP42-202ENST00000404008 TRIM10Q9UDY6 481 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 FBXL21Q9UKT6 434 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 CA14Q9ULX7 337 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 SNX10Q9Y5X0 201 aa30.35■■■□□ 2.45
USP42-202ENST00000404008 NEDD8-MDP1E9PL57 170 aa30.34■■■□□ 2.45
USP42-202ENST00000404008 F5H5T6 163 aa30.34■■■□□ 2.45
USP42-202ENST00000404008 PENKP01210 267 aaPredicted RBP30.34■■■□□ 2.45
USP42-202ENST00000404008 CYBBP04839 570 aa30.34■■■□□ 2.45
USP42-202ENST00000404008 SLC25A11Q02978 314 aaKnown RBP30.34■■■□□ 2.45
USP42-202ENST00000404008 EFHC2Q5JST6 749 aa30.34■■■□□ 2.45
USP42-202ENST00000404008 LGI2Q8N0V4 545 aa30.34■■■□□ 2.45
USP42-202ENST00000404008 DDI1Q8WTU0 396 aa30.34■■■□□ 2.45
USP42-202ENST00000404008 EDAQ92838 391 aa30.34■■■□□ 2.45
USP42-202ENST00000404008 BHMTQ93088 406 aa30.34■■■□□ 2.45
USP42-202ENST00000404008 TMA16Q96EY4 203 aaKnown RBP30.34■■■□□ 2.45
USP42-202ENST00000404008 OSBPL2Q9H1P3 480 aa30.34■■■□□ 2.45
USP42-202ENST00000404008 ARHGEF3Q9NR81 526 aa30.34■■■□□ 2.45
USP42-202ENST00000404008 SPECC1L-ADORA2AF8WAN1 911 aa30.33■■■□□ 2.45
USP42-202ENST00000404008 BUB1O43683 1085 aa30.33■■■□□ 2.45
USP42-202ENST00000404008 BUB1BO60566 1050 aaPredicted RBP30.33■■■□□ 2.45
USP42-202ENST00000404008 TYRP14679 529 aa30.33■■■□□ 2.45
USP42-202ENST00000404008 IL1R2P27930 398 aa30.33■■■□□ 2.45
USP42-202ENST00000404008 CTHP32929 405 aa30.33■■■□□ 2.45
USP42-202ENST00000404008 MLF2Q15773 248 aaPredicted RBP30.33■■■□□ 2.45
USP42-202ENST00000404008 FBXL22Q6P050 247 aa30.33■■■□□ 2.45
USP42-202ENST00000404008 C14orf80Q86SX3 495 aa30.33■■■□□ 2.45
USP42-202ENST00000404008 RALGPS2Q86X27 583 aaPredicted RBP30.33■■■□□ 2.45
USP42-202ENST00000404008 ZNF683Q8IZ20 524 aa30.33■■■□□ 2.45
USP42-202ENST00000404008 TPCN2Q8NHX9 752 aa30.33■■■□□ 2.45
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms