RNA–Protein interactions for RNA: ENST00000395684.5

SHMT1-205, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best)

Gene SHMT1, Length 2,652 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-205ENST00000395684 ACMSDQ8TDX5 336 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 ZFAND2BQ8WV99 257 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 ARNTL2Q8WYA1 636 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 CLMNQ96JQ2 1002 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 CSPG4P5Q96PW8 444 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 LGMNQ99538 433 aa13.08□□□□□ -0.31
SHMT1-205ENST00000395684 ZNF487B1APH4 448 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 ZNF195O14628 629 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 CCNT2O60583 730 aaKnown RBP13.08□□□□□ -0.32
SHMT1-205ENST00000395684 GLRA3O75311 464 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 PDE5AO76074 875 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 KLHL2O95198 593 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 C22orf31O95567 290 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 NR2C2P49116 596 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 COPAP53621 1224 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 EPHB1P54762 984 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 SESN2P58004 480 aaPredicted RBP13.08□□□□□ -0.32
SHMT1-205ENST00000395684 TNFAIP2Q03169 654 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 CCNIQ14094 377 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 DBN1Q16643 649 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 NCBP2-AS2Q69YL0 99 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 PGM2L1Q6PCE3 622 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 ADGRG6Q86SQ4 1221 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 CNKSR2Q8WXI2 1034 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 GBP5Q96PP8 586 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 CAMKK2Q96RR4 588 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 KCTD15Q96SI1 283 aaPredicted RBP13.08□□□□□ -0.32
SHMT1-205ENST00000395684 C11orf84Q9BUA3 381 aaPredicted RBP13.08□□□□□ -0.32
SHMT1-205ENST00000395684 NFKBIZQ9BYH8 718 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 GCOM2Q9BZD3 368 aaPredicted RBP13.08□□□□□ -0.32
SHMT1-205ENST00000395684 TMEM216Q9P0N5 145 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 ADAMTS6Q9UKP5 1117 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 ITGA11Q9UKX5 1188 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 AP4E1Q9UPM8 1137 aa13.08□□□□□ -0.32
SHMT1-205ENST00000395684 A6NJR5 290 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 HBP1O60381 514 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 SNUPNO95149 360 aaKnown RBP13.07□□□□□ -0.32
SHMT1-205ENST00000395684 SERPINE1P05121 402 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 MGAT1P26572 445 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 SARNPP82979 210 aaKnown RBP13.07□□□□□ -0.32
SHMT1-205ENST00000395684 PEX6Q13608 980 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 HNRNPDQ14103 355 aaKnown RBP13.07□□□□□ -0.32
SHMT1-205ENST00000395684 FAM187BQ17R55 369 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 LPCAT4Q643R3 524 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 DHDDSQ86SQ9 333 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 FBXO16Q8IX29 292 aaPredicted RBP13.07□□□□□ -0.32
SHMT1-205ENST00000395684 PYROXD2Q8N2H3 581 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 CCDC185Q8N715 623 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 HTR3CQ8WXA8 447 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 PPP2R3CQ969Q6 453 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 STN1Q9H668 368 aaKnown RBP13.07□□□□□ -0.32
SHMT1-205ENST00000395684 ZNF358Q9NW07 568 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 DCDC2Q9UHG0 476 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 LOC100653049A0A140TA62 436 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 E2F8A0AVK6 867 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 KRT34O76011 436 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 ITGA2BP08514 1039 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 GOT1P17174 413 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 PHKA2P46019 1235 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 ASPHQ12797 758 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 SFT2D3Q587I9 215 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 SESTD1Q86VW0 696 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 PDSS2Q86YH6 399 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 EFCAB3Q8N7B9 438 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 SLC26A7Q8TE54 656 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 CENPIQ92674 756 aaPredicted RBP13.07□□□□□ -0.32
SHMT1-205ENST00000395684 FAM192AQ9GZU8 254 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 SMARCAD1Q9H4L7 1026 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 CYP4F11Q9HBI6 524 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 EVPLQ92817 2033 aa13.07□□□□□ -0.32
SHMT1-205ENST00000395684 A0A0A0MRY4 1105 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 PPEF2O14830 753 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 AP1G2O75843 785 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 DGKIO75912 1065 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 ZFXP17010 805 aaPredicted RBP13.06□□□□□ -0.32
SHMT1-205ENST00000395684 RAB27AP51159 221 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 BTKQ06187 659 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 SOWAHAQ2M3V2 549 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 NOL9Q5SY16 702 aaKnown RBP13.06□□□□□ -0.32
SHMT1-205ENST00000395684 BSPRYQ5W0U4 402 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 LRRC8BQ6P9F7 803 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 MTHFD1LQ6UB35 978 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 RASSF3Q86WH2 238 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 PHTF2Q8N3S3 785 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 COLGALT1Q8NBJ5 622 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 OR6Y1Q8NGX8 325 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 TFB1MQ8WVM0 346 aaKnown RBP13.06□□□□□ -0.32
SHMT1-205ENST00000395684 CCDC124Q96CT7 223 aaKnown RBP13.06□□□□□ -0.32
SHMT1-205ENST00000395684 SPATA13Q96N96 652 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 PGLYRP2Q96PD5 576 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 CEP41Q9BYV8 373 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 COPG2Q9UBF2 871 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 MORF4L1Q9UBU8 362 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 CDH22Q9UJ99 828 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 SNX9Q9Y5X1 595 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 HCRTO43612 131 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 STAU1O95793 577 aaKnown RBP13.06□□□□□ -0.32
SHMT1-205ENST00000395684 MLNP12872 115 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 PTPN9P43378 593 aa13.06□□□□□ -0.32
SHMT1-205ENST00000395684 MSLNQ13421 630 aaPredicted RBP13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms