RNA–Protein interactions for RNA: ENST00000394243.5

SYNPO-202, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 7,063 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-202ENST00000394243 CD3EAPO15446 510 aaKnown RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 CCNKO75909 580 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 CCR3P51677 355 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 MZT2AQ6P582 158 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 DDX53Q86TM3 631 aaKnown RBP12.12□□□□□ -0.47
SYNPO-202ENST00000394243 HIPK1Q86Z02 1210 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 FAM126BQ8IXS8 530 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 CAMKK1Q8N5S9 505 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 ZNF614Q8N883 585 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 PIGUQ9H490 435 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 VANGL2Q9ULK5 521 aa12.12□□□□□ -0.47
SYNPO-202ENST00000394243 KIAA0556O60303 1618 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 PLA2G6O60733 806 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 IL18RAPO95256 599 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 RASSF6Q6ZTQ3 369 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 STX12Q86Y82 276 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 COLGALT1Q8NBJ5 622 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 TBCDQ9BTW9 1192 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 TEX13BQ9BXU2 312 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 WDCPQ9H6R7 721 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 ZNF608Q9ULD9 1512 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-202ENST00000394243 SF3B1O75533 1304 aaKnown RBP eCLIP12.11□□□□□ -0.47
SYNPO-202ENST00000394243 A8MUI8 341 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 TULP2O00295 520 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 KATNA1O75449 491 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 LBPP18428 481 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 PAICSP22234 425 aaKnown RBP12.11□□□□□ -0.47
SYNPO-202ENST00000394243 ZNF543Q08ER8 600 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 TBX2Q13207 712 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-202ENST00000394243 HPDLQ96IR7 371 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 YME1L1Q96TA2 773 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 WDR27A2RRH5 827 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 ABLIM1O14639 778 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 ATP6V1G1O75348 118 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 ANXA6P08133 673 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 SLC15A2Q16348 729 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 FGD3Q5JSP0 725 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 C16orf46Q6P387 395 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 NLGN1Q8N2Q7 840 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 SFRP1Q8N474 314 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 MID1IP1Q9NPA3 183 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 CLTBP09497 229 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 NAA20P61599 178 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 GRB10Q13322 594 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 CARTPTQ16568 116 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 THOC7Q6I9Y2 204 aaKnown RBP12.11□□□□□ -0.47
SYNPO-202ENST00000394243 ADHFE1Q8IWW8 467 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 FBXO30Q8TB52 745 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 SLC25A23Q9BV35 468 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 RAD18Q9NS91 495 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 ATP7AQ04656 1500 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 KIF1BO60333 1816 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 SRRM3A6NNA2 597 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-202ENST00000394243 DPYSL4O14531 572 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 CNPP09543 421 aaKnown RBP12.11□□□□□ -0.47
SYNPO-202ENST00000394243 ATF4P18848 351 aaPredicted RBP12.11□□□□□ -0.47
SYNPO-202ENST00000394243 CYP4F2P78329 520 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 CYP4F3Q08477 520 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 UBAP2LQ14157 1087 aaKnown RBP12.11□□□□□ -0.47
SYNPO-202ENST00000394243 FRG1Q14331 258 aaKnown RBP12.11□□□□□ -0.47
SYNPO-202ENST00000394243 EMC2Q15006 297 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 DPY19L2Q6NUT2 758 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 COMMD9Q9P000 198 aa12.11□□□□□ -0.47
SYNPO-202ENST00000394243 PCNAP12004 261 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 MSH3P20585 1137 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 STAT5AP42229 794 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 UBP1Q9NZI7 540 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 MRPS7Q9Y2R9 242 aaKnown RBP12.1□□□□□ -0.47
SYNPO-202ENST00000394243 A0A096LPK6 155 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 H7C0S8 307 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 IRF1P10914 325 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 NPY2RP49146 381 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 C5orf22Q49AR2 442 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 SEPT12Q8IYM1 358 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ACTRT2Q8TDY3 377 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 FAR1Q8WVX9 515 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 CAMKK2Q96RR4 588 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 OSBPL11Q9BXB4 747 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 TMEM138Q9NPI0 162 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 PIH1D1Q9NWS0 290 aaKnown RBP12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ENOPH1Q9UHY7 261 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 DOLKQ9UPQ8 538 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 UQCRBP14927 111 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ERCC2P18074 760 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 PRKAA2P54646 552 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 BNC1Q01954 994 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 QPCTQ16769 361 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 FAM196AQ6ZSG2 479 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ATG9AQ7Z3C6 839 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 MYO1HQ8N1T3 1032 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ZNF540Q8NDQ6 660 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 CINPQ9BW66 212 aaPredicted RBP12.1□□□□□ -0.47
SYNPO-202ENST00000394243 ELOVL6Q9H5J4 265 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 TBX20Q9UMR3 447 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 SLC12A4Q9UP95 1085 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 PMF1-BGLAPU3KQ54 211 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 IGSF9BQ9UPX0 1349 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 CYP11B2P19099 503 aa12.1□□□□□ -0.47
SYNPO-202ENST00000394243 IREB2P48200 963 aaKnown RBP12.1□□□□□ -0.47
SYNPO-202ENST00000394243 IDH2P48735 452 aaKnown RBP12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms