RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 ERMARDQ5T6L9 678 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 TRIQKQ629K1 86 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 AHCYL2Q96HN2 611 aaKnown RBP14.02□□□□□ -0.16
COL4A1-201ENST00000375820 NARS2Q96I59 477 aaKnown RBP14.02□□□□□ -0.16
COL4A1-201ENST00000375820 PXMP2Q9NR77 195 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 SHROOM2Q13796 1616 aa14.02□□□□□ -0.16
COL4A1-201ENST00000375820 BUD23O43709 281 aaKnown RBP14.02□□□□□ -0.17
COL4A1-201ENST00000375820 EGFRP00533 1210 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 ELK3P41970 407 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 SNX30Q5VWJ9 437 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 CASP12Q6UXS9 341 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 KCNMB4Q86W47 210 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 OMA1Q96E52 524 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 SEMA4AQ9H3S1 761 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 WDR41Q9HAD4 459 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 TSPAN16Q9UKR8 245 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 NAALADL1Q9UQQ1 740 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 IPPQ9Y573 584 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 POLR1AO95602 1720 aaPredicted RBP14.02□□□□□ -0.17
COL4A1-201ENST00000375820 GLI1P08151 1106 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 GTF2A2P52657 109 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 C1DQ13901 141 aaKnown RBP14.02□□□□□ -0.17
COL4A1-201ENST00000375820 FAM171A1Q5VUB5 890 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 ADI1Q9BV57 179 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 DGCR6LQ9BY27 220 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 PDP2Q9P2J9 529 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 SNCAIPQ9Y6H5 919 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 F8VZ95 297 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 KCNK1O00180 336 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 SMAPO00193 183 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 RAG1P15918 1043 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 NUP107P57740 925 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 FASTKQ14296 549 aaKnown RBP14.02□□□□□ -0.17
COL4A1-201ENST00000375820 ITIH4Q14624 930 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 ZNF621Q6ZSS3 439 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 SLC26A11Q86WA9 606 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 CDK20Q8IZL9 346 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 CYP4Z2PQ8N1L4 340 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 BBS4Q96RK4 519 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 NCKIPSDQ9NZQ3 722 aa14.02□□□□□ -0.17
COL4A1-201ENST00000375820 CAP2P40123 477 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 SYN2Q92777 582 aaPredicted RBP14.01□□□□□ -0.17
COL4A1-201ENST00000375820 PHACTR1Q9C0D0 580 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 TLR8Q9NR97 1041 aaKnown RBP14.01□□□□□ -0.17
COL4A1-201ENST00000375820 BTN3A1O00481 513 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 AKAP3O75969 853 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 VAPBO95292 243 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 TPBGLP0DKB5 382 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 ARF5P84085 180 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 LGI2Q8N0V4 545 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 PLA2G12BQ9BX93 195 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 RAD21L1Q9H4I0 556 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 KLHL31Q9H511 634 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 ATP13A1Q9HD20 1204 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 DIABLOQ9NR28 239 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 GHRP10912 638 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 PKNOX1P55347 436 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 CRADDP78560 199 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 PLD1Q13393 1074 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 FNDC3BQ53EP0 1204 aaKnown RBP14.01□□□□□ -0.17
COL4A1-201ENST00000375820 ZNF470Q6ECI4 717 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 CYP20A1Q6UW02 462 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 FBXO33Q7Z6M2 555 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 AKT1S1Q96B36 256 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 TUBGCP4Q9UGJ1 667 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 ALDH2P05091 517 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 SNRPFP62306 86 aaKnown RBP14.01□□□□□ -0.17
COL4A1-201ENST00000375820 KPNB1Q14974 876 aaKnown RBP14.01□□□□□ -0.17
COL4A1-201ENST00000375820 MARC1Q5VT66 337 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 FAM45BPQ6NSW5 357 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 TAF2Q6P1X5 1199 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 C16orf46Q6P387 395 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 POLLQ9UGP5 575 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 ZNF112Q9UJU3 913 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 DYTNA2CJ06 578 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 PIK3CDO00329 1044 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 SNPHO15079 494 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 CNPP09543 421 aaKnown RBP14.01□□□□□ -0.17
COL4A1-201ENST00000375820 USP17L7P0C7H9 530 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 TYMPP19971 482 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 NPY2RP49146 381 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 SRP54P61011 504 aaKnown RBP14.01□□□□□ -0.17
COL4A1-201ENST00000375820 PTPN11Q06124 597 aaPredicted RBP14.01□□□□□ -0.17
COL4A1-201ENST00000375820 BST2Q10589 180 aaKnown RBP14.01□□□□□ -0.17
COL4A1-201ENST00000375820 AADACL2Q6P093 401 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 FBXO39Q8N4B4 442 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 TCP10LQ8TDR4 215 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 ZDHHC6Q9H6R6 413 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 TCF7L2Q9NQB0 619 aa14.01□□□□□ -0.17
COL4A1-201ENST00000375820 RBP1P09455 135 aa14□□□□□ -0.17
COL4A1-201ENST00000375820 TBX4P57082 545 aa14□□□□□ -0.17
COL4A1-201ENST00000375820 DGCR6Q14129 220 aa14□□□□□ -0.17
COL4A1-201ENST00000375820 NT5DC4Q86YG4 428 aa14□□□□□ -0.17
COL4A1-201ENST00000375820 GRIN3AQ8TCU5 1115 aa14□□□□□ -0.17
COL4A1-201ENST00000375820 TMEM159Q96B96 161 aa14□□□□□ -0.17
COL4A1-201ENST00000375820 BTBD9Q96Q07 612 aa14□□□□□ -0.17
COL4A1-201ENST00000375820 SEMA4BQ9NPR2 832 aaPredicted RBP14□□□□□ -0.17
COL4A1-201ENST00000375820 A1CFQ9NQ94 594 aaKnown RBP14□□□□□ -0.17
COL4A1-201ENST00000375820 KLHL3Q9UH77 587 aa14□□□□□ -0.17
COL4A1-201ENST00000375820 PACSIN3Q9UKS6 424 aa14□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms