RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 SOX4Q06945 474 aaPredicted RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 ACTN3Q08043 901 aaPredicted RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 SEMA3BQ13214 749 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 ORC1Q13415 861 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 ITGA7Q13683 1181 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 LAMB3Q13751 1172 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 BTG3Q14201 252 aaPredicted RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 HIC1Q14526 733 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 KCNA10Q16322 511 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 BBS9Q3SYG4 887 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 PPP6R3Q5H9R7 873 aaPredicted RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 MDH1BQ5I0G3 518 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 TMCO4Q5TGY1 634 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 WSCD1Q658N2 575 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 ATG16L1Q676U5 607 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 STEAP4Q687X5 459 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 NCBP2-AS2Q69YL0 99 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 TIGD7Q6NT04 549 aaPredicted RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 TRNP1Q6NT89 227 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 KCNT2Q6UVM3 1135 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 CXCL17Q6UXB2 119 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 KYAT3Q6YP21 454 aaKnown RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 AGMOQ6ZNB7 445 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 RFX8Q6ZV50 586 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 PAQR9Q6ZVX9 377 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 TRPM8Q7Z2W7 1104 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 SPATA21Q7Z572 469 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 CCDC91Q7Z6B0 441 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 ZC3H18Q86VM9 953 aaKnown RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 KLHDC8BQ8IXV7 354 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 SLC43A3Q8NBI5 491 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 FBF1Q8TES7 1133 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 SREK1Q8WXA9 508 aaKnown RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 TRIB2Q92519 343 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 CCT6BQ92526 530 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 PCED1BQ96HM7 432 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 C8orf48Q96LL4 319 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 TGS1Q96RS0 853 aaKnown RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 GAD1Q99259 594 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 PAFAH2Q99487 392 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 MRPL9Q9BYD2 267 aaKnown RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 B3GNT5Q9BYG0 378 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 DPEP3Q9H4B8 488 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 RXFP1Q9HBX9 757 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 ARHGEF4Q9NR80 690 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 KRT82Q9NSB4 513 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 OLA1Q9NTK5 396 aaKnown RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 MRGBPQ9NV56 204 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 KLK14Q9P0G3 267 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 HSFX1Q9UBD0 423 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 SRRDQ9UH36 339 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 MID2Q9UJV3 735 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 RPL26L1Q9UNX3 145 aaKnown RBP8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 PCDHA11Q9Y5I1 949 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 USH1CQ9Y6N9 552 aa8.99□□□□□ -0.97
SNRNP40-202ENST00000373720 MGAMO43451 1857 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 TCRBV9S1A1TA0A576 114 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 SMIM23A6NLE4 172 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 POC1B-GALNT4F8VUJ3 575 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 PPEF2O14830 753 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 B3GAT3O94766 335 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 OAS1P00973 400 aaKnown RBP8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 APRTP07741 180 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 PGAM1P18669 254 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 KRT4P19013 534 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 CCNCP24863 283 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 GCAP28676 217 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 HOXC13P31276 330 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 CCR1P32246 355 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 MAP2K2P36507 400 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 GARSP41250 739 aaKnown RBP8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 ELK3P41970 407 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 CDK7P50613 346 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 CLCNKBP51801 687 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 ACLYP53396 1101 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 CACNB2Q08289 660 aaPredicted RBP8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 PPIDQ08752 370 aaKnown RBP8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 IFRD2Q12894 506 aaPredicted RBP8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 IFT88Q13099 833 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 BFSP2Q13515 415 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 DPYSQ14117 519 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 TMED2Q15363 201 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 ANO4Q32M45 955 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 SPANXN3Q5MJ09 141 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 ANKRD20A2Q5SQ80 823 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 ANKRD20A1Q5TYW2 823 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 ANKRD20A3Q5VUR7 823 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 OVOS1Q6IE37 1185 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 C1orf228Q6PIY5 440 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 ZNF598Q86UK7 904 aaKnown RBP8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 MON1AQ86VX9 555 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 ECHDC2Q86YB7 292 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 LRRC34Q8IZ02 419 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 KIRREL3Q8IZU9 778 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 BANPQ8N9N5 519 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 GLIS1Q8NBF1 620 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 TRPV1Q8NER1 839 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 MAGEC3Q8TD91 643 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 ZDHHC16Q969W1 377 aa8.98□□□□□ -0.97
SNRNP40-202ENST00000373720 APOPT1Q96IL0 206 aa8.98□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms