RNA–Protein interactions for RNA: ENST00000367253.8

SYNE1-206, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 5,189 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-206ENST00000367253 DAPK2Q9UIK4 370 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 MAFFQ9ULX9 164 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 SLC27A6Q9Y2P4 619 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 GPC6Q9Y625 555 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 STX7O15400 261 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 ATP9AO75110 1047 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 AGXTP21549 392 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 SMARCA1P28370 1054 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 CDC27P30260 824 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 HMOX2P30519 316 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 VHLP40337 213 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 PPP3CCP48454 512 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 GMFBP60983 142 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 FKBP1AP62942 108 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 FKBP3Q00688 224 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 PTPN12Q05209 780 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 DPCR1Q3MIW9 517 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TMEM63BQ5T3F8 832 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 PMF1Q6P1K2 205 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 ZNF473Q8WTR7 871 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 COG1Q8WTW3 980 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 CAB39LQ9H9S4 337 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 DYRK1BQ9Y463 629 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 SNX13Q9Y5W8 968 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 PMF1-BGLAPU3KQ54 211 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 ZSCAN5BA6NJL1 495 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 GMFGO60234 142 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 DLX3O60479 287 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 CRTAPO75718 401 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 IGSF6O95976 241 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 IFNA16P05015 189 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 SERPING1P05155 500 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 ADD1P35611 737 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 SKIV2L2P42285 1042 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 HSPA13P48723 471 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 SERPINH1P50454 418 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 OTUD4Q01804 1114 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 HEATR6Q6AI08 1181 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 ZNF410Q86VK4 478 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 IPCEF1Q8WWN9 437 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 MOCOSQ96EN8 888 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 FAM117AQ9C073 453 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 MLXIPLQ9NP71 852 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 VPS4AQ9UN37 437 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D3DA0A087WVF3 549 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D3IA0A087WXS9 549 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D3EA0A087X179 549 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D3KA0A087X1G2 549 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D3FA6NER0 549 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D3LB9A6J9 549 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 SETD1AO15047 1707 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 NDUFB10O96000 172 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D3HP0C7X1 549 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 FDPSP14324 419 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 CASP5P51878 434 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 RHOAP61586 193 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 DYNLT1P63172 113 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 SSX2Q16385 188 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 HLFQ16534 295 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 CDO1Q16878 200 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D3GQ6DHY5 549 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 OVOS1Q6IE37 1185 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D3CQ6IPX1 549 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 TBC1D3Q8IZP1 549 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 MTMR14Q8NCE2 650 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 DENND1AQ8TEH3 1009 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 KRCC1Q9NPI7 259 aaPredicted RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 ANAPC2Q9UJX6 822 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 HPS5Q9UPZ3 1129 aa8.84□□□□□ -0.99
SYNE1-206ENST00000367253 MRPS33Q9Y291 106 aaKnown RBP8.84□□□□□ -0.99
SYNE1-206ENST00000367253 EIF3HO15372 352 aaKnown RBP eCLIP8.84□□□□□ -1
SYNE1-206ENST00000367253 ZCCHC18P0CG32 403 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 IL1R1P14778 569 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 NPR2P20594 1047 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 MUTP22033 750 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 HADHAP40939 763 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 GNA13Q14344 377 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 KLHL12Q53G59 568 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 NCCRP1Q6ZVX7 275 aaPredicted RBP8.84□□□□□ -1
SYNE1-206ENST00000367253 IRF7Q92985 503 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 FAF2Q96CS3 445 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 CCT8L2Q96SF2 557 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 NT5C1AQ9BXI3 368 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 OSBPL3Q9H4L5 887 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 CNOT8Q9UFF9 292 aaKnown RBP8.84□□□□□ -1
SYNE1-206ENST00000367253 SH3BGRL2Q9UJC5 107 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 PCDHGA4Q9Y5G9 962 aa8.84□□□□□ -1
SYNE1-206ENST00000367253 PITPNM2Q9BZ72 1349 aa8.83□□□□□ -1
SYNE1-206ENST00000367253 CCDC182A6NF36 153 aa8.83□□□□□ -1
SYNE1-206ENST00000367253 C3orf70A6NLC5 250 aaPredicted RBP8.83□□□□□ -1
SYNE1-206ENST00000367253 SMIM22K7EJ46 135 aa8.83□□□□□ -1
SYNE1-206ENST00000367253 AP3D1O14617 1153 aa8.83□□□□□ -1
SYNE1-206ENST00000367253 KLHL18O94889 574 aa8.83□□□□□ -1
SYNE1-206ENST00000367253 FBXO21O94952 628 aa8.83□□□□□ -1
SYNE1-206ENST00000367253 AKAP5P24588 427 aa8.83□□□□□ -1
SYNE1-206ENST00000367253 MDH1P40925 334 aaKnown RBP8.83□□□□□ -1
SYNE1-206ENST00000367253 MAPK8P45983 427 aa8.83□□□□□ -1
SYNE1-206ENST00000367253 CDH8P55286 799 aa8.83□□□□□ -1
SYNE1-206ENST00000367253 NR1D2Q14995 579 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms