RNA–Protein interactions for RNA: ENST00000357604.9

UPF2-202, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF2, Length 5,193 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-202ENST00000357604 MRPL58Q14197 206 aaKnown RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 GRM2Q14416 872 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 HSF5Q4G112 596 aaPredicted RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 ZNF783Q6ZMS7 281 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 TPRG1Q6ZUI0 275 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 RALGPS2Q86X27 583 aaPredicted RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 SNX19Q92543 992 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 SMOQ99835 787 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 ARHGEF4Q9NR80 690 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.48□□□□□ -0.891e-7■□□□□ 11.2
UPF2-202ENST00000357604 KCTD5Q9NXV2 234 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 RSPH14Q9UHP6 348 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 HEY1Q9Y5J3 304 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 RFPL2O75678 378 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 RHOBTB1O94844 696 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 OXTRP30559 389 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 PHBP35232 272 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 SLC7A9P82251 487 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 INAVAQ3KP66 663 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 SYDE1Q6ZW31 735 aaPredicted RBP9.48□□□□□ -0.89
UPF2-202ENST00000357604 FAM131BQ86XD5 332 aa9.48□□□□□ -0.89
UPF2-202ENST00000357604 TUBBP07437 444 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 PNMA6AP0CW24 399 aaPredicted RBP9.47□□□□□ -0.89
UPF2-202ENST00000357604 RHOQP17081 205 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 RRM1P23921 792 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 CLCN1P35523 988 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 ADCY8P40145 1251 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 GRIA2P42262 883 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 RING1Q06587 406 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 MAMLD1Q13495 774 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 LRRC38Q5VT99 294 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 TMEM184AQ6ZMB5 413 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 LINC00523Q86TU6 105 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 CHPFQ8IZ52 775 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 KAT5Q92993 513 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 AZIN2Q96A70 460 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 ARHGEF26Q96DR7 871 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 HAPLN3Q96S86 360 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 ADGRE3Q9BY15 652 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 RHOBTB2Q9BYZ6 727 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 DNMT3BQ9UBC3 853 aaKnown RBP9.47□□□□□ -0.89
UPF2-202ENST00000357604 SEPT3Q9UH03 358 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 CA14Q9ULX7 337 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 ZNF840PA6NDX5 716 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 KCNU1A8MYU2 1149 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 PRNPP04156 253 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 GABRB2P47870 512 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 ZNF132P52740 706 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 CCDC13Q8IYE1 715 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 GJD3Q8N144 294 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 FNIP1Q8TF40 1166 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 PDCD6IPQ8WUM4 868 aaKnown RBP9.47□□□□□ -0.89
UPF2-202ENST00000357604 ATRIPQ8WXE1 791 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 TMEM209Q96SK2 561 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 KCNK16Q96T55 309 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 DDX23Q9BUQ8 820 aaKnown RBP9.47□□□□□ -0.89
UPF2-202ENST00000357604 DOLKQ9UPQ8 538 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 ZKSCAN5Q9Y2L8 839 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 PDE1BQ01064 536 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 ILF2Q12905 390 aaKnown RBP9.47□□□□□ -0.89
UPF2-202ENST00000357604 RUNX3Q13761 415 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 ELF2Q15723 593 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 CASC4Q6P4E1 433 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 TMEM110Q86TL2 294 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 FAM3CQ92520 227 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 ELMO3Q96BJ8 720 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 TTLL2Q9BWV7 592 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 OR12D3Q9UGF7 316 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 SFMBT1Q9UHJ3 866 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 VANGL2Q9ULK5 521 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 AAR2Q9Y312 384 aaKnown RBP9.47□□□□□ -0.89
UPF2-202ENST00000357604 SCN10AQ9Y5Y9 1956 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 LRRC72A6NJI9 287 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 RBAK-RBAKDNI3L0D1 243 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 PAGE1O75459 146 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 SERPINA4P29622 427 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 IRS1P35568 1242 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 FDFT1P37268 417 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 PTPN21Q16825 1174 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 TXNDC8Q6A555 127 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 RNF25Q96BH1 459 aaPredicted RBP9.47□□□□□ -0.89
UPF2-202ENST00000357604 C16orf45Q96MC5 204 aaPredicted RBP9.47□□□□□ -0.89
UPF2-202ENST00000357604 TTC25Q96NG3 672 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 STMN4Q9H169 189 aaPredicted RBP9.47□□□□□ -0.89
UPF2-202ENST00000357604 ERVW-1Q9UQF0 538 aa9.47□□□□□ -0.89
UPF2-202ENST00000357604 C3orf70A6NLC5 250 aaPredicted RBP9.46□□□□□ -0.89
UPF2-202ENST00000357604 BTNL10A8MVZ5 291 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 MBTPS2O43462 519 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 GNSP15586 552 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 THOC5Q13769 683 aaKnown RBP9.46□□□□□ -0.89
UPF2-202ENST00000357604 PMF1Q6P1K2 205 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 ARID3BQ8IVW6 561 aaPredicted RBP9.46□□□□□ -0.89
UPF2-202ENST00000357604 PPHLN1Q8NEY8 458 aaKnown RBP9.46□□□□□ -0.89
UPF2-202ENST00000357604 CXorf40AQ8TE69 158 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 SLC35F5Q8WV83 523 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 BHMTQ93088 406 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 RMDN1Q96DB5 314 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 LRCH3Q96II8 777 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 CFAP57Q96MR6 1250 aa9.46□□□□□ -0.89
UPF2-202ENST00000357604 SDCBP2Q9H190 292 aa9.46□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms