RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 ANKRD40Q6AI12 368 aa12.89□□□□□ -0.35
COL6A3-203ENST00000353578 LYNP07948 512 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 SERPINF2P08697 491 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 VCLP18206 1134 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 USF2Q15853 346 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 LRRC24Q50LG9 513 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CDKAL1Q5VV42 579 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 PACRGLQ8N7B6 248 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 TBC1D30Q9Y2I9 924 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 GIT1Q9Y2X7 761 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 LOC100506127A0A0U1RQW1 187 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 ERI2A8K979 691 aaKnown RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 FBXO43Q4G163 708 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 ZNF394Q53GI3 561 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 NIM1KQ8IY84 436 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 TEKT5Q96M29 485 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 FAM193BQ96PV7 902 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 LY9Q9HBG7 655 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 RNF17Q9BXT8 1623 aaKnown RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 KPNA5O15131 536 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 IL18RAPO95256 599 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CMTR1Q8N1G2 835 aaKnown RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 ZNF446Q9NWS9 450 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 IGSF9Q9P2J2 1179 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 DNAJC16Q9Y2G8 782 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CENPBD1B2RD01 187 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 PDGFRAP16234 1089 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 HKDC1Q2TB90 917 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CNSTQ6PJW8 725 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 MB21D2Q8IYB1 491 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 AFG1LQ8WV93 481 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 DPPA5A6NC42 116 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 FAM153BP0C7A2 387 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 PSMA1P25786 263 aaKnown RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CCNA1P78396 465 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 HIST2H2ACQ16777 129 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CNPY1Q3B7I2 92 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 HIST2H2AA3Q6FI13 130 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 ST3GAL5Q9UNP4 418 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 PSMD12O00232 456 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CD58P19256 250 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 PPP3CCP48454 512 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 THEM5Q8N1Q8 247 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CIDECQ96AQ7 238 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 DCUN1D1Q96GG9 259 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 SRPK1Q96SB4 655 aaKnown RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CATSPERBQ9H7T0 1116 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 SMURF2Q9HAU4 748 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 ISPDA4D126 451 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 IFRD1O00458 451 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 RPL3P39023 403 aaKnown RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CMPK2Q5EBM0 449 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 SRBD1Q8N5C6 995 aaKnown RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 CREB3L1Q96BA8 519 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 FAM89AQ96GI7 184 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 GTPBP2Q9BX10 602 aaKnown RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 NXF1Q9UBU9 619 aaKnown RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 TRAFD1O14545 582 aaPredicted RBP12.88□□□□□ -0.35
COL6A3-203ENST00000353578 PTGER2P43116 358 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 IDI1Q13907 227 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 C10orf107Q8IVU9 208 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 IZUMO1Q8IYV9 350 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 POLIQ9UNA4 740 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 ACOT9Q9Y305 439 aa12.88□□□□□ -0.35
COL6A3-203ENST00000353578 HS6ST1O60243 411 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 ELP6Q0PNE2 266 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 GRM4Q14833 912 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 OR8H1Q8NGG4 311 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 PYDC1Q8WXC3 89 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 EBF2Q9HAK2 575 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 A0A087WWV3 80 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 NR5A2O00482 541 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 MSR1P21757 451 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 PTX3P26022 381 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 HARS2P49590 506 aaKnown RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 TCIRG1Q13488 830 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 TYW3Q6IPR3 259 aaKnown RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 C17orf75Q9HAS0 396 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 UBQLN1Q9UMX0 589 aaKnown RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 MYH14Q7Z406 1995 aaKnown RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 TNRQ92752 1358 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 FAM240BA0A1B0GVZ2 78 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 DGKIO75912 1065 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 ITGA2BP08514 1039 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 CLTBP09497 229 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 ETS1P14921 441 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 RAB27AP51159 221 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 GALNT3Q14435 633 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 FAM187BQ17R55 369 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 SLITRK4Q8IW52 837 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 WRNIP1Q96S55 665 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 IFT80Q9P2H3 777 aaPredicted RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 M0QYV0 167 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 TM7SF2O76062 418 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 GLI1P08151 1106 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 MGAT5Q09328 741 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 FAPQ12884 760 aa12.87□□□□□ -0.35
COL6A3-203ENST00000353578 FAM120BQ96EK7 910 aaKnown RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 MRPL4Q9BYD3 311 aaKnown RBP12.87□□□□□ -0.35
COL6A3-203ENST00000353578 DHX35Q9H5Z1 703 aaKnown RBP12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms