RNA–Protein interactions for RNA: ENST00000345005.8

CLK3-201, Transcript of CDC like kinase 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLK3, Length 1,846 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-201ENST00000345005 CTXN3Q4LDR2 81 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 SLC39A12Q504Y0 691 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 NUGGCQ68CJ6 796 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 SLC9A4Q6AI14 798 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 CNKSR3Q6P9H4 555 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 RHBDF2Q6PJF5 856 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 BEND5Q7L4P6 421 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 CCDC185Q8N715 623 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 PLD5Q8N7P1 536 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 PCDH19Q8TAB3 1148 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 RSAD2Q8WXG1 361 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 TBC1D31Q96DN5 1066 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 PGAP3Q96FM1 320 aaPredicted RBP13.25□□□□□ -0.29
CLK3-201ENST00000345005 FAM210AQ96ND0 272 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 CDC42EP4Q9H3Q1 356 aaKnown RBP13.25□□□□□ -0.29
CLK3-201ENST00000345005 SENP1Q9P0U3 644 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 RCOR3Q9P2K3 495 aaPredicted RBP13.25□□□□□ -0.29
CLK3-201ENST00000345005 SF3B1O75533 1304 aaKnown RBP eCLIP13.25□□□□□ -0.29
CLK3-201ENST00000345005 ABHD2P08910 425 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 NCAM1P13591 858 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 PECAM1P16284 738 aaPredicted RBP13.25□□□□□ -0.29
CLK3-201ENST00000345005 FGFR3P22607 806 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 CYP2F1P24903 491 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 ARL4AP40617 200 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 MSH2P43246 934 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 IFNAR2P48551 515 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 PKN2Q16513 984 aaKnown RBP13.25□□□□□ -0.29
CLK3-201ENST00000345005 P3H1Q32P28 736 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 OTUD1Q5VV17 481 aaPredicted RBP13.25□□□□□ -0.29
CLK3-201ENST00000345005 IZUMO3Q5VZ72 239 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 ZNF280DQ6N043 979 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 VSTM1Q6UX27 236 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 FAM131BQ86XD5 332 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 AGGF1Q8N302 714 aaeCLIP13.25□□□□□ -0.29
CLK3-201ENST00000345005 LRRC43Q8N309 656 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 PQLC3Q8N755 202 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 SLC7A14Q8TBB6 771 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 ARMC5Q96C12 935 aa13.25□□□□□ -0.29
CLK3-201ENST00000345005 OXCT2Q9BYC2 517 aaPredicted RBP13.25□□□□□ -0.29
CLK3-201ENST00000345005 LTBP2Q14767 1821 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 COL4A4P53420 1690 aaPredicted RBP13.24□□□□□ -0.29
CLK3-201ENST00000345005 PLXNA3P51805 1871 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 CCDC85CA6NKD9 419 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 H7C4K7 107 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 DNALI1O14645 258 aaPredicted RBP13.24□□□□□ -0.29
CLK3-201ENST00000345005 TP73O15350 636 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 GALTP07902 379 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 RBP3P10745 1247 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 GJA8P48165 433 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 ROR1Q01973 937 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 GPS1Q13098 491 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 NME3Q13232 169 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 CCDC38Q502W7 563 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 EFHC2Q5JST6 749 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 BSPRYQ5W0U4 402 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 FUT10Q6P4F1 479 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 DARS2Q6PI48 645 aaKnown RBP13.24□□□□□ -0.29
CLK3-201ENST00000345005 ASRGL1Q7L266 308 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 BHLHA9Q7RTU4 235 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 PCGF5Q86SE9 256 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 DIS3LQ8TF46 1054 aaKnown RBP13.24□□□□□ -0.29
CLK3-201ENST00000345005 TMEM237Q96Q45 408 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 KCTD15Q96SI1 283 aaPredicted RBP13.24□□□□□ -0.29
CLK3-201ENST00000345005 GPR62Q9BZJ7 368 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 KCNK9Q9NPC2 374 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 ABCF3Q9NUQ8 709 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 MARCH5Q9NX47 278 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 MTMR10Q9NXD2 777 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 ABI2Q9NYB9 513 aaPredicted RBP13.24□□□□□ -0.29
CLK3-201ENST00000345005 CTNNAL1Q9UBT7 734 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 PCDHB5Q9Y5E4 795 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 GREB1Q4ZG55 1949 aa13.24□□□□□ -0.29
CLK3-201ENST00000345005 SYNJ2BP-COX16A0A087WUM0 186 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 CFAP69A5D8W1 941 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 H7C0C1 242 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 TNFRSF10BO14763 440 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 DCTN3O75935 186 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 IFNB1P01574 187 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 CLTBP09497 229 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 OR4Q2P0C623 313 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 NEFHP12036 1026 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 BRAFP15056 766 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 ATP2A2P16615 1042 aaKnown RBP13.23□□□□□ -0.29
CLK3-201ENST00000345005 MAGEA11P43364 429 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 SLCO1A2P46721 670 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 ATP5OP48047 213 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 NR2C2P49116 596 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 PITX1P78337 314 aaPredicted RBP13.23□□□□□ -0.29
CLK3-201ENST00000345005 ARL13BQ3SXY8 428 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 CMPK2Q5EBM0 449 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 C1orf228Q6PIY5 440 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 NPNTQ6UXI9 565 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 EP400NLQ6ZTU2 488 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 CCDC25Q86WR0 208 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 SCN4BQ8IWT1 228 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 INPP5DQ92835 1189 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 NTAN1Q96AB6 310 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 STAMBPL1Q96FJ0 436 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 C8orf48Q96LL4 319 aa13.23□□□□□ -0.29
CLK3-201ENST00000345005 TTC25Q96NG3 672 aa13.23□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms