RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 DNAJC21Q5F1R6 531 aaKnown RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 BRMS1LQ5PSV4 323 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 HP1BP3Q5SSJ5 553 aaPredicted RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 SYCP2LQ5T4T6 812 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 SLC8B1Q6J4K2 584 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 CENPUQ71F23 418 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 TMEM169Q96HH4 297 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 SERPINB11Q96P15 392 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 LGMNQ99538 433 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 SIK2Q9H0K1 926 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 RC3H2Q9HBD1 1191 aaKnown RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 ARHGEF38Q9NXL2 777 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 IL37Q9NZH6 218 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 NR2E3Q9Y5X4 410 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 KIAA1671Q9BY89 1806 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 TLDC2A0PJX2 215 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 LRIG2O94898 1065 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 VAV1P15498 845 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 EPHB2P29323 1055 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 ZNF135P52742 658 aaPredicted RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 RPL10AP62906 217 aaKnown RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 AP1B1Q10567 949 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 PDIA2Q13087 525 aaKnown RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 FASTKD3Q14CZ7 662 aaKnown RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 FAXCQ5TGI0 409 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 ZBED8Q8IZ13 594 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 EPS8L3Q8TE67 593 aaKnown RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 GIPC2Q8TF65 315 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 SPATA17Q96L03 361 aa13.82□□□□□ -0.2
HMGB1-202ENST00000339872 MRPL42Q9Y6G3 142 aaKnown RBP13.82□□□□□ -0.2
HMGB1-202ENST00000339872 FAM92AA1XBS5 289 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 EFCAB14O75071 495 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 PAGE1O75459 146 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 BANF1O75531 89 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 SOD2P04179 222 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 ATF6P18850 670 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 ARL4CP56559 192 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 TAF10Q12962 218 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 PDK1Q15118 436 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 OTOP2Q7RTS6 562 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 SLC39A11Q8N1S5 342 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 CCNYQ8ND76 341 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 HTR3CQ8WXA8 447 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 KLC2Q9H0B6 622 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 BACE2Q9Y5Z0 518 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 SMAPO00193 183 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 PPP1R12AO14974 1030 aaPredicted RBP13.81□□□□□ -0.2
HMGB1-202ENST00000339872 MOCS2O96007 188 aaPredicted RBP13.81□□□□□ -0.2
HMGB1-202ENST00000339872 SRGAP2BP0DMP2 458 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 SLCO1A2P46721 670 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 MTM1Q13496 603 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 KCNJ11Q14654 390 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 PPP2R5DQ14738 602 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 FNBP1LQ5T0N5 605 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 AGBL2Q5U5Z8 902 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 MSANTD2Q6P1R3 559 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 PDZD4Q76G19 769 aaPredicted RBP13.81□□□□□ -0.2
HMGB1-202ENST00000339872 TP53INP2Q8IXH6 220 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 CMTR2Q8IYT2 770 aaKnown RBP13.81□□□□□ -0.2
HMGB1-202ENST00000339872 NPWQ8N729 165 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 HAPLN3Q96S86 360 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 YME1L1Q96TA2 773 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 OSBPL2Q9H1P3 480 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 PRDM12Q9H4Q4 367 aa13.81□□□□□ -0.2
HMGB1-202ENST00000339872 TLR8Q9NR97 1041 aaKnown RBP13.81□□□□□ -0.2
HMGB1-202ENST00000339872 MAGED2Q9UNF1 606 aaPredicted RBP13.81□□□□□ -0.2
HMGB1-202ENST00000339872 DYNC1LI1Q9Y6G9 523 aaKnown RBP13.81□□□□□ -0.2
HMGB1-202ENST00000339872 CHADO15335 359 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 GCATO75600 419 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 LAG3P18627 525 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 GLUD2P49448 558 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 EFEMP1Q12805 493 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 PRKD1Q15139 912 aaPredicted RBP13.8□□□□□ -0.2
HMGB1-202ENST00000339872 RWDD4Q6NW29 188 aaKnown RBP13.8□□□□□ -0.2
HMGB1-202ENST00000339872 ARHGEF18Q6ZSZ5 1173 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 CCDC13Q8IYE1 715 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 COLGALT1Q8NBJ5 622 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 EXOC4Q96A65 974 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 TTC25Q96NG3 672 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 PRDM10Q9NQV6 1147 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 SEPT10Q9P0V9 454 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 NOVA2Q9UNW9 492 aaKnown RBP13.8□□□□□ -0.2
HMGB1-202ENST00000339872 C5orf60A6NFR6 353 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 SLC38A8A6NNN8 435 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 RASGRF2O14827 1237 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 BAIAP3O94812 1187 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 NR1D1P20393 614 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 HPDP32754 393 aaPredicted RBP13.8□□□□□ -0.2
HMGB1-202ENST00000339872 SERPINB6P35237 376 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 PSEN1P49768 467 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 LONRF1Q17RB8 773 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 MSS51Q4VC12 460 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 RASIP1Q5U651 963 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 C4orf22Q6V702 233 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 CAPN12Q6ZSI9 719 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 CROCCP2Q86T23 111 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 ANKMY2Q8IV38 441 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 PDIK1LQ8N165 341 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 VPS52Q8N1B4 723 aa13.8□□□□□ -0.2
HMGB1-202ENST00000339872 P2RY11Q96G91 374 aa13.8□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms