RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 PLD1Q13393 1074 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ARL13BQ3SXY8 428 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 C10orf120Q5SQS8 335 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 C9orf50Q5SZB4 431 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 SYCP2LQ5T4T6 812 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 MSANTD2Q6P1R3 559 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 RHBDF2Q6PJF5 856 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 SYDE1Q6ZW31 735 aaPredicted RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 C14orf80Q86SX3 495 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 CCDC25Q86WR0 208 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 CCDC89Q8N998 374 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 DEPDC1BQ8WUY9 529 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 RSAD2Q8WXG1 361 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 CLP1Q92989 425 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 FCRL2Q96LA5 508 aaPredicted RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 ZNF512Q96ME7 567 aaPredicted RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 LGMNQ99538 433 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 RAD9AQ99638 391 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 C17orf80Q9BSJ5 609 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 TRIM62Q9BVG3 475 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 TTLL2Q9BWV7 592 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 USP29Q9HBJ7 922 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 TLR8Q9NR97 1041 aaKnown RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 AAASQ9NRG9 546 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ARHGEF38Q9NXL2 777 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 FAM53CQ9NYF3 392 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 MARCH2Q9P0N8 246 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 WHRNQ9P202 907 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 RCOR3Q9P2K3 495 aaPredicted RBP4.28□□□□□ -1.72
MCF2-201ENST00000338585 NEU3Q9UQ49 428 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ATP8A1Q9Y2Q0 1164 aa4.28□□□□□ -1.72
MCF2-201ENST00000338585 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 SLC12A8A0AV02 714 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 LINC01553A4QN01 128 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 KCNU1A8MYU2 1149 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 AGPSO00116 658 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 NRG2O14511 850 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 KCNN4O15554 427 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 TGM5O43548 720 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 TLR5O60602 858 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CXCL14O95715 111 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CTSAP10619 480 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 VAV1P15498 845 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 EPHB2P29323 1055 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CCR1P32246 355 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 BMPR1AP36894 532 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 HSD17B3P37058 310 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 IRAK1P51617 712 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 AIF1P55008 147 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 TBX4P57082 545 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 NNTQ13423 1086 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 MTM1Q13496 603 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 FAXCQ5TGI0 409 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PIK3R6Q5UE93 754 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 ANKRD22Q5VYY1 191 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 TPGS2Q68CL5 300 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 HIBCHQ6NVY1 386 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 TMC7Q7Z402 723 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 ARHGAP18Q8N392 663 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 OR2W6PQ8NHA6 318 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 DPF3Q92784 378 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 SLC39A13Q96H72 371 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 SERPINB11Q96P15 392 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 OLFM3Q96PB7 478 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 TCF25Q9BQ70 676 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 CEP41Q9BYV8 373 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 FRMD8P1Q9BZ68 369 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 TXLNGYQ9BZA5 131 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 EPB41L4BQ9H329 900 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PCDH9Q9HC56 1237 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 LRRC4CQ9HCJ2 640 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 ZNF334Q9HCZ1 680 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 CLIC5Q9NZA1 410 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 ANAPC5Q9UJX4 755 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 TLR6Q9Y2C9 796 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 INSL5Q9Y5Q6 135 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 HS3ST4Q9Y661 456 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 TCRBV7S3A2A0A539 114 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 C2orf78A6NCI8 922 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 ZNF840PA6NDX5 716 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 HIDE1A8MVS5 230 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 F5H423 210 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 GOLGA8MH3BSY2 632 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 DNALI1O14645 258 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 MAP3K13O43283 966 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 COCHO43405 550 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 ATP8B1O43520 1251 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PPFIA2O75334 1257 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 ZFXP17010 805 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 ITIH2P19823 946 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 ELF1P32519 619 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 IRS1P35568 1242 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 ALDH1A3P47895 512 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 KCNQ1P51787 676 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PPP2R5DQ14738 602 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 PAFAH1B3Q15102 231 aaKnown RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 TRIP4Q15650 581 aaPredicted RBP4.27□□□□□ -1.73
MCF2-201ENST00000338585 SLC45A4Q5BKX6 768 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 BRMS1LQ5PSV4 323 aa4.27□□□□□ -1.73
MCF2-201ENST00000338585 HP1BP3Q5SSJ5 553 aaPredicted RBP4.27□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 77 ms