RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 CASP4P49662 377 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 EIF2B5Q13144 721 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 GLB1LQ6UWU2 654 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 ZNF557Q8N988 423 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 SNX31Q8N9S9 440 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 SPAG4Q9NPE6 437 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 TMCC3Q9ULS5 477 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 PCDHA11Q9Y5I1 949 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 RNF103O00237 685 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 ADSLP30566 484 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 CCNG1P51959 295 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 RP9Q8TA86 221 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 FNIP1Q8TF40 1166 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 PI4K2AQ9BTU6 479 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 WWOXQ9NZC7 414 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 CROTQ9UKG9 612 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 CCDC154A6NI56 674 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 BBIP1A8MTZ0 92 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 POLRMTO00411 1230 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 DLGAP3O95886 979 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 KRT6AP02538 564 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 KRT6BP04259 564 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 PRDX6P30041 224 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 KRT6CP48668 564 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 INTS13Q9NVM9 706 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 LGALS13Q9UHV8 139 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 NDUFAF1Q9Y375 327 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 BACE1P56817 501 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 NDUFA5Q16718 116 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 METTL7BQ6UX53 244 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 B4GALNT2Q8NHY0 566 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 RORBQ92753 470 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 GPR101Q96P66 508 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 CAMKK2Q96RR4 588 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 RUVBL2Q9Y230 463 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 KLRC4O43908 158 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 RAG1P15918 1043 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 RPL26P61254 145 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 TRIP4Q15650 581 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 PLEKHA7Q6IQ23 1121 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 INTS5Q6P9B9 1019 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 MYO1HQ8N1T3 1032 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 ZNF526Q8TF50 670 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 GLMNQ92990 594 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 IDI2Q9BXS1 227 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 WDR12Q9GZL7 423 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 IL17RBQ9NRM6 502 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 RCOR3Q9P2K3 495 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 PRKAG2Q9UGJ0 569 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 FAM25AB3EWG3 89 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 FAM25CB3EWG5 89 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 FAM25GB3EWG6 89 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 NFIBO00712 420 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 ALOX5P09917 674 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 PECAM1P16284 738 aaPredicted RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 PIK3R1P27986 724 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 GTF2BQ00403 316 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 MAMLD1Q13495 774 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 CYP4Z2PQ8N1L4 340 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 THUMPD3Q9BV44 507 aaKnown RBP10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 ENTPD7Q9NQZ7 604 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 DDIT4Q9NX09 232 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 DNAJB4Q9UDY4 337 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 KLHL3Q9UH77 587 aa10.53□□□□□ -0.72
CCDC88A-202ENST00000336838 ANKRD36CQ5JPF3 1778 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 RGPD5Q99666 1765 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 A0A0A0MRY4 1105 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 OVGP1Q12889 678 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 POLD3Q15054 466 aaPredicted RBP10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 UNC93AQ86WB7 457 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 TDRPQ86YL5 185 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 PTCD2Q8WV60 388 aaKnown RBP10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 SPATA13Q96N96 652 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 MRPL57Q9BQC6 102 aaKnown RBP10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 SPON2Q9BUD6 331 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 CLPBQ9H078 707 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 FANCEQ9HB96 536 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 ZBTB39O15060 712 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 TCEA3O75764 348 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 EZH2Q15910 746 aaKnown RBP10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 INAQ16352 499 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 ADGRF2Q8IZF7 708 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 ACTRT2Q8TDY3 377 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 GPR63Q9BZJ6 419 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 TMEM216Q9P0N5 145 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 TFR2Q9UP52 801 aa10.52□□□□□ -0.72
CCDC88A-202ENST00000336838 PRIM2P49643 509 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 ZNF143P52747 638 aaPredicted RBP10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 PPIDQ08752 370 aaKnown RBP10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 GJB7Q6PEY0 223 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 C1orf186Q6ZWK4 172 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 IKBIPQ70UQ0 350 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 GPRC5AQ8NFJ5 357 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 DIS3LQ8TF46 1054 aaKnown RBP10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 KIAA1683Q9H0B3 1180 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 MUC3BQ9H195 1237 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 CCNB1IP1Q9NPC3 277 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 LOC100653049A0A140TA62 436 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 KRT34O76011 436 aa10.52□□□□□ -0.73
CCDC88A-202ENST00000336838 CPB1P15086 417 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms