RNA–Protein interactions for RNA: ENST00000330494.11

CHD3-201, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene CHD3, Length 7,328 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-201ENST00000330494 C3P01024 1663 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 ARHGAP23Q9P227 1491 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 TRPC5OSA6NMA1 111 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 FAM107AO95990 144 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 RARGP13631 454 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 RBL1P28749 1068 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 CCNG1P51959 295 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 CYP51A1Q16850 503 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 ATP13A4Q4VNC1 1196 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 FNDC3BQ53EP0 1204 aaKnown RBP10.43□□□□□ -0.74
CHD3-201ENST00000330494 PPM1LQ5SGD2 360 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 KCNT2Q6UVM3 1135 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 RIN3Q8TB24 985 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 KCNMB3Q9NPA1 279 aa10.43□□□□□ -0.74
CHD3-201ENST00000330494 ASTN1O14525 1302 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 TIMM44O43615 452 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 BANF1O75531 89 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 SMNDC1O75940 238 aaKnown RBP eCLIP10.42□□□□□ -0.743e-14■■■■■ 30
CHD3-201ENST00000330494 AMHP03971 560 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 ATP6V1B1P15313 513 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 PTENP60484 403 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 SLC6A3Q01959 620 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 HTR3CQ8WXA8 447 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 PAWRQ96IZ0 340 aaKnown RBP10.42□□□□□ -0.74
CHD3-201ENST00000330494 SLC40A1Q9NP59 571 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 TCHHQ07283 1943 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 F8W810 466 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 CD52P31358 61 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 ZNF410Q86VK4 478 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 MAGEB18Q96M61 343 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 PLSCR1O15162 318 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 VAPBO95292 243 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 ERVK-10P10266 1014 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 PTPN1P18031 435 aaKnown RBP10.42□□□□□ -0.74
CHD3-201ENST00000330494 ITGALP20701 1170 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 HOXA10P31260 410 aaPredicted RBP10.42□□□□□ -0.74
CHD3-201ENST00000330494 FMO4P31512 558 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 RCN1Q15293 331 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 RAP1GAP2Q684P5 730 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 KCNMB4Q86W47 210 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 GRIN3AQ8TCU5 1115 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 PLEKHA8Q96JA3 519 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 SIPA1L2Q9P2F8 1722 aaPredicted RBP10.42□□□□□ -0.74
CHD3-201ENST00000330494 SMAPO00193 183 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 RIPK2O43353 540 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 MSH3P20585 1137 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 SEL1L3Q68CR1 1132 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 WDR59Q6PJI9 974 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 VSIG10LQ86VR7 867 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 RSPH1Q8WYR4 309 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 PPCSQ9HAB8 311 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 H2AFY2Q9P0M6 372 aaPredicted RBP10.42□□□□□ -0.74
CHD3-201ENST00000330494 UBR1Q8IWV7 1749 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 H3BQF6 201 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 CPA3P15088 417 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 TM4SF1P30408 202 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 CYLC2Q14093 348 aaPredicted RBP10.42□□□□□ -0.74
CHD3-201ENST00000330494 NT5DC1Q5TFE4 455 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 RBM23Q86U06 439 aaKnown RBP10.42□□□□□ -0.74
CHD3-201ENST00000330494 ZDHHC6Q9H6R6 413 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 DLGAP2Q9P1A6 1054 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 ELNP15502 786 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 FKBP1AP62942 108 aaKnown RBP10.42□□□□□ -0.74
CHD3-201ENST00000330494 MED21Q13503 144 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 ZC3H12AQ5D1E8 599 aaKnown RBP10.42□□□□□ -0.74
CHD3-201ENST00000330494 N4BP2L1Q5TBK1 243 aaPredicted RBP10.42□□□□□ -0.74
CHD3-201ENST00000330494 CACHD1Q5VU97 1274 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 VMP1Q96GC9 406 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 PCDHA3Q9Y5H8 950 aa10.42□□□□□ -0.74
CHD3-201ENST00000330494 EPHB6O15197 1021 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 PADI4Q9UM07 663 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 BAIAP3O94812 1187 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 IFI35P80217 286 aaPredicted RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 DMPKQ09013 629 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 ITGA9Q13797 1035 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 C16orf46Q6P387 395 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 ZPBP2Q6X784 338 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 FBXL16Q8N461 479 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 FRMD8P1Q9BZ68 369 aaPredicted RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 DNAJC18Q9H819 358 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 COPS7BQ9H9Q2 264 aaPredicted RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 BPIFA1Q9NP55 256 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 TBC1D13Q9NVG8 400 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 ASTN2O75129 1339 aaPredicted RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 PECAM1P16284 738 aaPredicted RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 RAB27AP51159 221 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 CAPSQ13938 189 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 NFYCQ13952 458 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 ZNF268Q14587 947 aaPredicted RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 TAF2Q6P1X5 1199 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 KDM7AQ6ZMT4 941 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 DENND1CQ8IV53 801 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 CENPLQ8N0S6 344 aaPredicted RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 MKL1Q969V6 931 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 LENG1Q96BZ8 264 aaPredicted RBP10.41□□□□□ -0.74
CHD3-201ENST00000330494 TBL1YQ9BQ87 522 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 EMILIN2Q9BXX0 1053 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 ASB7Q9H672 318 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 VPS9D1Q9Y2B5 631 aa10.41□□□□□ -0.74
CHD3-201ENST00000330494 DYRK1BQ9Y463 629 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms