RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 RNF39Q9H2S5 420 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 WARS2Q9UGM6 360 aaKnown RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 PPM1HQ9ULR3 514 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 PEX2P28328 305 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 TFDP2Q14188 446 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 C16orf72Q14CZ0 275 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 FASTKD1Q53R41 847 aaKnown RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 TTC39BQ5VTQ0 682 aaPredicted RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 HPS6Q86YV9 775 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 ALLCQ8N6M5 410 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 SLC4A11Q8NBS3 891 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 SIKE1Q9BRV8 207 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 TSPYL2Q9H2G4 693 aaPredicted RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 ST6GALNAC4Q9H4F1 302 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 ZNF212Q9UDV6 495 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 ARHGAP10A1A4S6 786 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 CASTOR2A6NHX0 329 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 APOL1O14791 398 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 SCAMP3O14828 347 aaKnown RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 ZC3H11AO75152 810 aaKnown RBP eCLIP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 APOEP02649 317 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 IGFBP6P24592 240 aaPredicted RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 PITX1P78337 314 aaPredicted RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 OCRLQ01968 901 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 SLC5A9Q2M3M2 681 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 CGB2Q6NT52 195 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 TRMT10BQ6PF06 316 aaKnown RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 TRIM67Q6ZTA4 783 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 PHF13Q86YI8 300 aaPredicted RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 TP53INP2Q8IXH6 220 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 PEBP4Q96S96 227 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 MIPEPQ99797 713 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 C2orf40Q9H1Z8 148 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 PREBQ9HCU5 417 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 KLHL8Q9P2G9 620 aaPredicted RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 PRKAG3Q9UGI9 489 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 PGAP2Q9UHJ9 254 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 CPSF3Q9UKF6 684 aaKnown RBP13.03□□□□□ -0.32
RETREG3-201ENST00000309428 DOLKQ9UPQ8 538 aa13.03□□□□□ -0.32
RETREG3-201ENST00000309428 E7ENQ6 273 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 PDHXO00330 501 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 CRCPO75575 148 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 MLH1P40692 756 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 NDUFV1P49821 464 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 ITKQ08881 620 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 GALNTL6Q49A17 601 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 LIN52Q52LA3 116 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 HEATR6Q6AI08 1181 aaKnown RBP13.02□□□□□ -0.32
RETREG3-201ENST00000309428 GRAMD4Q6IC98 578 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 XRRA1Q6P2D8 792 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 SLC26A11Q86WA9 606 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 ERO1BQ86YB8 467 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 DNERQ8NFT8 737 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 EBF4Q9BQW3 602 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 TMEM109Q9BVC6 243 aa13.02□□□□□ -0.32
RETREG3-201ENST00000309428 KNL1Q8NG31 2342 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 NME5P56597 212 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 RBP5P82980 135 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 LRRC8EQ6NSJ5 796 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 SIX6OS1Q8N1H7 587 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 BCAP29Q9UHQ4 241 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 WNK3Q9BYP7 1800 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 TCRBV9S1A1TA0A576 114 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 RECQL4O94761 1208 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 VAV1P15498 845 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 GARSP41250 739 aaKnown RBP13.02□□□□□ -0.33
RETREG3-201ENST00000309428 SULT1E1P49888 294 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 MAP3K7CLP57077 242 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 DPYSL3Q14195 570 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 PDK3Q15120 406 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 CNPY1Q3B7I2 92 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 ANKRD20A4Q4UJ75 823 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 SLC44A4Q53GD3 710 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 N4BP2L1Q5TBK1 243 aaPredicted RBP13.02□□□□□ -0.33
RETREG3-201ENST00000309428 MTHFD1LQ6UB35 978 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 CYP2R1Q6VVX0 501 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 XYLT1Q86Y38 959 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 RIOX2Q8IUF8 465 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 MPP5Q8N3R9 675 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 MTMR14Q8NCE2 650 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 SLC7A14Q8TBB6 771 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 APOPT1Q96IL0 206 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 SNRNP25Q9BV90 132 aaKnown RBP13.02□□□□□ -0.33
RETREG3-201ENST00000309428 PCDH9Q9HC56 1237 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 WDR35Q9P2L0 1181 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 SHOC2Q9UQ13 582 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 TDRKHQ9Y2W6 561 aaKnown RBP13.02□□□□□ -0.33
RETREG3-201ENST00000309428 SNX13Q9Y5W8 968 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 ANKRD12Q6UB98 2062 aa13.02□□□□□ -0.33
RETREG3-201ENST00000309428 COL11A2P13942 1736 aaPredicted RBP13.01□□□□□ -0.33
RETREG3-201ENST00000309428 GOT1P17174 413 aa13.01□□□□□ -0.33
RETREG3-201ENST00000309428 ARL4AP40617 200 aa13.01□□□□□ -0.33
RETREG3-201ENST00000309428 SH3BGRP55822 239 aaPredicted RBP13.01□□□□□ -0.33
RETREG3-201ENST00000309428 PPIDQ08752 370 aaKnown RBP13.01□□□□□ -0.33
RETREG3-201ENST00000309428 ADIGQ0VDE8 80 aa13.01□□□□□ -0.33
RETREG3-201ENST00000309428 GRIK4Q16099 956 aa13.01□□□□□ -0.33
RETREG3-201ENST00000309428 FSCBQ5H9T9 825 aa13.01□□□□□ -0.33
RETREG3-201ENST00000309428 TNS4Q8IZW8 715 aa13.01□□□□□ -0.33
RETREG3-201ENST00000309428 SPATA6LQ8N4H0 392 aa13.01□□□□□ -0.33
RETREG3-201ENST00000309428 HDAC11Q96DB2 347 aa13.01□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms