RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 DENND1BQ6P3S1 775 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 VTA1Q9NP79 307 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 PDGFCQ9NRA1 345 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 RRN3Q9NYV6 651 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 CPSF3Q9UKF6 684 aaKnown RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 COG5Q9UP83 839 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 WASF2Q9Y6W5 498 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 TBC1D4O60343 1298 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 HUS1O60921 280 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 CSPG5O95196 566 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 MSX2P35548 267 aaPredicted RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 TPI1P60174 286 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 RNF139Q8WU17 664 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 LENG1Q96BZ8 264 aaPredicted RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 AVENQ9NQS1 362 aaPredicted RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 SETD4Q9NVD3 440 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 KIF17Q9P2E2 1029 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 RRN3P2A6NIE6 340 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 MOCS2O96007 188 aaPredicted RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 CXCL8P10145 99 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 HADHAP40939 763 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 FMO1Q01740 532 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 C1QBPQ07021 282 aaKnown RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 FUT11Q495W5 492 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 GNASQ5JWF2 1037 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 FAM193BQ96PV7 902 aaPredicted RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 RUBCNLQ9H714 662 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 LRRC4CQ9HCJ2 640 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 ZMYM2Q9UBW7 1377 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 DFFAO00273 331 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 CAPSQ13938 189 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 ASTE1Q2TB18 679 aaPredicted RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 RFWD3Q6PCD5 774 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 STRA8Q7Z7C7 330 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 DAW1Q8N136 415 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 RBM15BQ8NDT2 890 aaKnown RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 ZBED3Q96IU2 234 aaPredicted RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 CEP41Q9BYV8 373 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 PHACTR1Q9C0D0 580 aa15.76■□□□□ 0.11
SHH-201ENST00000297261 NKX1-2Q9UD57 310 aaPredicted RBP15.76■□□□□ 0.11
SHH-201ENST00000297261 ARHGEF9O43307 516 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 SUPT7LO94864 414 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 LGALS2P05162 132 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 CES3Q6UWW8 571 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 MAN1C1Q9NR34 630 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 CHST12Q9NRB3 414 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 CISHQ9NSE2 258 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 GRHL1Q9NZI5 618 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 UBR3Q6ZT12 1888 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 GOLGA8CPA6NN73 597 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 RTN3O95197 1032 aaPredicted RBP15.75■□□□□ 0.11
SHH-201ENST00000297261 FOXN2P32314 431 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 FOLH1Q04609 750 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 MAPK11Q15759 364 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 DGCR14Q96DF8 476 aaKnown RBP15.75■□□□□ 0.11
SHH-201ENST00000297261 ABHD16BQ9H3Z7 469 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 ARHGEF38Q9NXL2 777 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 PLA2G4CQ9UP65 541 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 COL24A1Q17RW2 1714 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 SOWAHBA6NEL2 793 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 NKRFO15226 690 aaKnown RBP eCLIP15.75■□□□□ 0.111e-6■■■□□ 15.6
SHH-201ENST00000297261 DLGAP3O95886 979 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 BCL10O95999 233 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 ABHD2P08910 425 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 STAG3L1P0CL83 205 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 TRIM60Q495X7 471 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 GLRA4Q5JXX5 417 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 OTUD3Q5T2D3 398 aaPredicted RBP15.75■□□□□ 0.11
SHH-201ENST00000297261 ZPBP2Q6X784 338 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 TTC7BQ86TV6 843 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 KATNAL2Q8IYT4 538 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 CYP4X1Q8N118 509 aa15.75■□□□□ 0.11
SHH-201ENST00000297261 CADM1Q9BY67 442 aaKnown RBP15.75■□□□□ 0.11
SHH-201ENST00000297261 A0A0G2JLL6 359 aaPredicted RBP15.74■□□□□ 0.11
SHH-201ENST00000297261 CAPN8A6NHC0 703 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 LIASO43766 372 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 PRRT2Q7Z6L0 340 aaPredicted RBP15.74■□□□□ 0.11
SHH-201ENST00000297261 CCDC103Q8IW40 242 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 HPDLQ96IR7 371 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 DAPK2Q9UIK4 370 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 TRPC5OSA6NMA1 111 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 CLOCKO15516 846 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 GJB1P08034 283 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 S100A5P33763 92 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 SULT1E1P49888 294 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 CDC42EP1Q00587 391 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 IMPG1Q17R60 797 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 WDR49Q8IV35 697 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 PPP1R13LQ8WUF5 828 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 ULK4Q96C45 1275 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 KATNAL1Q9BW62 490 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 NDEL1Q9GZM8 345 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 RUVBL2Q9Y230 463 aaKnown RBP15.74■□□□□ 0.11
SHH-201ENST00000297261 CYP1A2P05177 515 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 USP46P62068 366 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 DMPKQ09013 629 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 GRIK4Q16099 956 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 FAM83EQ2M2I3 478 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 TBCELQ5QJ74 424 aa15.74■□□□□ 0.11
SHH-201ENST00000297261 ANO7Q6IWH7 933 aa15.74■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 93.4 ms