RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 SLC25A52Q3SY17 297 aa16.91■□□□□ 0.3
HOXD3-201ENST00000249440 FASTKD1Q53R41 847 aaKnown RBP16.91■□□□□ 0.3
HOXD3-201ENST00000249440 FAM131BQ86XD5 332 aa16.91■□□□□ 0.3
HOXD3-201ENST00000249440 WDR75Q8IWA0 830 aaKnown RBP16.91■□□□□ 0.3
HOXD3-201ENST00000249440 PYROXD2Q8N2H3 581 aa16.91■□□□□ 0.3
HOXD3-201ENST00000249440 PDCD7Q8N8D1 485 aaKnown RBP16.91■□□□□ 0.3
HOXD3-201ENST00000249440 SLC2A14Q8TDB8 520 aa16.91■□□□□ 0.3
HOXD3-201ENST00000249440 MICAL1Q8TDZ2 1067 aa16.91■□□□□ 0.3
HOXD3-201ENST00000249440 FAM167BQ9BTA0 163 aa16.91■□□□□ 0.3
HOXD3-201ENST00000249440 NAT9Q9BTE0 207 aa16.91■□□□□ 0.3
HOXD3-201ENST00000249440 KATNBL1Q9H079 304 aa16.91■□□□□ 0.3
HOXD3-201ENST00000249440 TAGLN3Q9UI15 199 aa16.91■□□□□ 0.3
HOXD3-201ENST00000249440 PIRO00625 290 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 NVLO15381 856 aaKnown RBP16.9■□□□□ 0.3
HOXD3-201ENST00000249440 GLRA3O75311 464 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 SMNDC1O75940 238 aaKnown RBP eCLIP16.9■□□□□ 0.3
HOXD3-201ENST00000249440 SERPINA6P08185 405 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 MMP3P08254 477 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 ABL2P42684 1182 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 CPA2P48052 419 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 SESN3P58005 492 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 SLC34A1Q06495 639 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 NIPAL4Q0D2K0 466 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 AP1B1Q10567 949 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 SNAPC2Q13487 334 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 NAB1Q13506 487 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 PCBP1Q15365 356 aaKnown RBP eCLIP16.9■□□□□ 0.3
HOXD3-201ENST00000249440 DGKDQ16760 1214 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 TREML1Q86YW5 311 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 WDR60Q8WVS4 1066 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 ZNF560Q96MR9 790 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 SETD4Q9NVD3 440 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 DCDC2Q9UHG0 476 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 SORCS3Q9UPU3 1222 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 MFHAS1Q9Y4C4 1052 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 NR2E3Q9Y5X4 410 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 PDCD11Q14690 1871 aaKnown RBP16.9■□□□□ 0.3
HOXD3-201ENST00000249440 RRN3P2A6NIE6 340 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 CAPN9O14815 690 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 RECQL4O94761 1208 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 PGAM1P18669 254 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 PNPLA4P41247 253 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 SULT1E1P49888 294 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 SNX30Q5VWJ9 437 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 PACS1Q6VY07 963 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 ZCCHC23Q6ZST2 131 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 ZNF467Q7Z7K2 595 aaPredicted RBP16.9■□□□□ 0.3
HOXD3-201ENST00000249440 UNC5BQ8IZJ1 945 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 DEFB106AQ8N104 65 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 APPL2Q8NEU8 664 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 PIWIL2Q8TC59 973 aaKnown RBP16.9■□□□□ 0.3
HOXD3-201ENST00000249440 ZC3H15Q8WU90 426 aaKnown RBP16.9■□□□□ 0.3
HOXD3-201ENST00000249440 FAM149B1Q96BN6 582 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 P2RY11Q96G91 374 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 CCDC106Q9BWC9 280 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 FAM49AQ9H0Q0 323 aaPredicted RBP16.9■□□□□ 0.3
HOXD3-201ENST00000249440 GDAP2Q9NXN4 497 aa16.9■□□□□ 0.3
HOXD3-201ENST00000249440 STX18Q9P2W9 335 aaKnown RBP16.9■□□□□ 0.3
HOXD3-201ENST00000249440 CORO1CQ9ULV4 474 aaPredicted RBP16.9■□□□□ 0.3
HOXD3-201ENST00000249440 SPECC1L-ADORA2AF8WAN1 911 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 STRNO43815 780 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 CAPN15O75808 1086 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 KRT36O76013 467 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 TOP3BO95985 862 aaKnown RBP16.89■□□□□ 0.29
HOXD3-201ENST00000249440 ALDOAP04075 364 aaKnown RBP16.89■□□□□ 0.29
HOXD3-201ENST00000249440 GLUD2P49448 558 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 SESN2P58004 480 aaPredicted RBP16.89■□□□□ 0.29
HOXD3-201ENST00000249440 IRX4P78413 519 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 CRADDP78560 199 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 RCN2Q14257 317 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 ZRSR2Q15696 482 aaKnown RBP16.89■□□□□ 0.29
HOXD3-201ENST00000249440 TNIP3Q96KP6 325 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 FAM161BQ96MY7 647 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 NXF3Q9H4D5 531 aaKnown RBP16.89■□□□□ 0.29
HOXD3-201ENST00000249440 NMRK1Q9NWW6 199 aa16.89■□□□□ 0.29
HOXD3-201ENST00000249440 F5H423 210 aaPredicted RBP16.88■□□□□ 0.29
HOXD3-201ENST00000249440 F8W8V4 182 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 RNF103O00237 685 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 TPP1O14773 563 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 XPO1O14980 1071 aaKnown RBP16.88■□□□□ 0.29
HOXD3-201ENST00000249440 XPOTO43592 962 aaKnown RBP16.88■□□□□ 0.29
HOXD3-201ENST00000249440 MFSD11O43934 449 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 GPR32O75388 356 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 SNAI1O95863 264 aaPredicted RBP16.88■□□□□ 0.29
HOXD3-201ENST00000249440 HOXD8P13378 290 aaPredicted RBP16.88■□□□□ 0.29
HOXD3-201ENST00000249440 AKAP5P24588 427 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 MGAT1P26572 445 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 ALDH18A1P54886 795 aaKnown RBP16.88■□□□□ 0.29
HOXD3-201ENST00000249440 KDSRQ06136 332 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 PDK1Q15118 436 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 DUSP28Q4G0W2 176 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 DNAL1Q4LDG9 190 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 RBM15BQ8NDT2 890 aaKnown RBP16.88■□□□□ 0.29
HOXD3-201ENST00000249440 ARNTL2Q8WYA1 636 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 ZNF333Q96JL9 665 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 APOL6Q9BWW8 343 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 OSBPL1AQ9BXW6 950 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 C1orf21Q9H246 121 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 XPNPEP3Q9NQH7 507 aa16.88■□□□□ 0.29
HOXD3-201ENST00000249440 ZNF638Q14966 1978 aaKnown RBP16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms