RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 APLFQ8IW19 511 aaPredicted RBP19.28■□□□□ 0.68
CPSF3-201ENST00000238112 PYROXD2Q8N2H3 581 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 LRRC52Q8N7C0 313 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 ANKRD52Q8NB46 1076 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 PPTC7Q8NI37 304 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 DCPSQ96C86 337 aaKnown RBP19.28■□□□□ 0.68
CPSF3-201ENST00000238112 CLPTM1LQ96KA5 538 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 OLFM3Q96PB7 478 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 C1orf21Q9H246 121 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 UTRNP46939 3433 aa19.28■□□□□ 0.68
CPSF3-201ENST00000238112 LYPLA1O75608 230 aaPredicted RBP19.27■□□□□ 0.68
CPSF3-201ENST00000238112 UPP2O95045 317 aa19.27■□□□□ 0.68
CPSF3-201ENST00000238112 PGAM1P18669 254 aa19.27■□□□□ 0.68
CPSF3-201ENST00000238112 AOC1P19801 751 aa19.27■□□□□ 0.68
CPSF3-201ENST00000238112 CCNHP51946 323 aaPredicted RBP19.27■□□□□ 0.68
CPSF3-201ENST00000238112 PDE1BQ01064 536 aa19.27■□□□□ 0.68
CPSF3-201ENST00000238112 PDE1CQ14123 709 aaPredicted RBP19.27■□□□□ 0.68
CPSF3-201ENST00000238112 PPP4R1Q8TF05 950 aa19.27■□□□□ 0.68
CPSF3-201ENST00000238112 SNX27Q96L92 541 aa19.27■□□□□ 0.68
CPSF3-201ENST00000238112 PANX3Q96QZ0 392 aa19.27■□□□□ 0.68
CPSF3-201ENST00000238112 ZNF184Q99676 751 aaPredicted RBP19.27■□□□□ 0.68
CPSF3-201ENST00000238112 STN1Q9H668 368 aaKnown RBP19.27■□□□□ 0.68
CPSF3-201ENST00000238112 PIH1D1Q9NWS0 290 aaKnown RBP19.27■□□□□ 0.68
CPSF3-201ENST00000238112 TXNDC16Q9P2K2 825 aa19.27■□□□□ 0.68
CPSF3-201ENST00000238112 DCDC2Q9UHG0 476 aa19.27■□□□□ 0.68
CPSF3-201ENST00000238112 APOBEC2Q9Y235 224 aaKnown RBP19.27■□□□□ 0.68
CPSF3-201ENST00000238112 POLR2AP24928 1970 aaKnown RBP19.27■□□□□ 0.68
CPSF3-201ENST00000238112 CITO14578 2027 aa19.27■□□□□ 0.67
CPSF3-201ENST00000238112 ITM2AO43736 263 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 GSRP00390 522 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 PDGFRBP09619 1106 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 KCNA4P22459 653 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 MGAT1P26572 445 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 ACADSBP45954 432 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 ACTR3P61158 418 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 AP2B1P63010 937 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 NAB1Q13506 487 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 STRADAQ7RTN6 431 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 FAM131BQ86XD5 332 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 UCMAQ8WVF2 138 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 C18orf25Q96B23 403 aaPredicted RBP19.26■□□□□ 0.67
CPSF3-201ENST00000238112 SYT15Q9BQS2 421 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 EIF2B3Q9NR50 452 aaKnown RBP19.26■□□□□ 0.67
CPSF3-201ENST00000238112 DLGAP2Q9P1A6 1054 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 SLC7A8Q9UHI5 535 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 EMCNQ9ULC0 261 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 SOX13Q9UN79 622 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 GINS2Q9Y248 185 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 USP3Q9Y6I4 520 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 RNF103O00237 685 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 HCRTO43612 131 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 PLIN3O60664 434 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 OPHN1O60890 802 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 FGF3P11487 239 aaPredicted RBP19.26■□□□□ 0.67
CPSF3-201ENST00000238112 TUBP50607 506 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 GLRA4Q5JXX5 417 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 TEDDM1Q5T9Z0 273 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 ZNF410Q86VK4 478 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 SEPT10Q9P0V9 454 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 SCOCQ9UIL1 159 aa19.26■□□□□ 0.67
CPSF3-201ENST00000238112 H3BRB1 525 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 MFSD11O43934 449 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 SERPINE1P05121 402 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 ANPEPP15144 967 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 KIZQ2M2Z5 673 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 C16orf70Q9BSU1 422 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 NAT9Q9BTE0 207 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 TUT1Q9H6E5 874 aaKnown RBP19.25■□□□□ 0.67
CPSF3-201ENST00000238112 RCOR3Q9P2K3 495 aaPredicted RBP19.25■□□□□ 0.67
CPSF3-201ENST00000238112 OTOFQ9HC10 1997 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 SCN1AP35498 2009 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 SPDYE5A6NIY4 337 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 MEI4A8MW99 385 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 KLHL2O95198 593 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 ITGA2BP08514 1039 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 SULT1E1P49888 294 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 GRIK3Q13003 919 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 GRIK4Q16099 956 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 TAPT1Q6NXT6 567 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 POTEAQ6S8J7 498 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 RASSF3Q86WH2 238 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 MYLK4Q86YV6 388 aaPredicted RBP19.25■□□□□ 0.67
CPSF3-201ENST00000238112 ANKRD13AQ8IZ07 590 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 ZNF778Q96MU6 729 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 FAM96AQ9H5X1 160 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 KRT82Q9NSB4 513 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 NDE1Q9NXR1 346 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 FZD10Q9ULW2 581 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 PAPPA2Q9BXP8 1791 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 PLXNA1Q9UIW2 1896 aa19.25■□□□□ 0.67
CPSF3-201ENST00000238112 SP100P23497 879 aaPredicted RBP19.24■□□□□ 0.67
CPSF3-201ENST00000238112 GNL1P36915 607 aaPredicted RBP19.24■□□□□ 0.67
CPSF3-201ENST00000238112 ERFP50548 548 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 PCLAFQ15004 111 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 EFHC1Q5JVL4 640 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 C9orf57Q5W0N0 161 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 SLC27A1Q6PCB7 646 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 CCNYQ8ND76 341 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 ARNTL2Q8WYA1 636 aa19.24■□□□□ 0.67
CPSF3-201ENST00000238112 FAM149B1Q96BN6 582 aa19.24■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms