RNA–Protein interactions for RNA: ENST00000225964.9

COL1A1-201, Transcript of collagen type I alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL1A1, Length 6,727 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-201ENST00000225964 REPS1Q96D71 796 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 SPRTNQ9H040 489 aaPredicted RBP13.55□□□□□ -0.24
COL1A1-201ENST00000225964 IKBKEQ14164 716 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 NEK10Q6ZWH5 1172 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 GPR141Q7Z602 305 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 ELOA2Q8IYF1 753 aaPredicted RBP13.55□□□□□ -0.24
COL1A1-201ENST00000225964 UXS1Q8NBZ7 420 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 SEMA4DQ92854 862 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 ROGDIQ9GZN7 287 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 KCNF1Q9H3M0 494 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 RNPEPQ9H4A4 650 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 WHRNQ9P202 907 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 TBC1D3BA6NDS4 549 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 TRIM13O60858 407 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 FAM20BO75063 409 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 HLA-DQA2P01906 255 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 IL1R1P14778 569 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 SP100P23497 879 aaPredicted RBP13.55□□□□□ -0.24
COL1A1-201ENST00000225964 CCND1P24385 295 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 CNTFP26441 200 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 RAB14P61106 215 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 MCOLN3Q8TDD5 553 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 DUSP12Q9UNI6 340 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 UNC13BO14795 1591 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 AMD1P17707 334 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 MAGEA10P43363 369 aaPredicted RBP13.55□□□□□ -0.24
COL1A1-201ENST00000225964 ALDH5A1P51649 535 aaPredicted RBP13.55□□□□□ -0.24
COL1A1-201ENST00000225964 FBXL19Q6PCT2 694 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 PIH1D1Q9NWS0 290 aaKnown RBP13.55□□□□□ -0.24
COL1A1-201ENST00000225964 MCM8Q9UJA3 840 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 TMX2Q9Y320 296 aa13.55□□□□□ -0.24
COL1A1-201ENST00000225964 CCT8L1PA6NM43 557 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SARSP49591 514 aaKnown RBP13.54□□□□□ -0.24
COL1A1-201ENST00000225964 BEX3Q00994 111 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 ACVR2BQ13705 512 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 CCDC92Q53HC0 331 aaPredicted RBP13.54□□□□□ -0.24
COL1A1-201ENST00000225964 DGKKQ5KSL6 1271 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SPPL2AQ8TCT8 520 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 C19orf60Q96EN9 201 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 PNMA5Q96PV4 448 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 PAFAH2Q99487 392 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 KLHL1Q9NR64 748 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 IL1RAPL1Q9NZN1 696 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 ZNF112Q9UJU3 913 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 ZDHHC9Q9Y397 364 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 GPSM3Q9Y4H4 160 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 WDR27A2RRH5 827 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 LSM8O95777 96 aaKnown RBP13.54□□□□□ -0.24
COL1A1-201ENST00000225964 PABPC1P11940 636 aaKnown RBP13.54□□□□□ -0.24
COL1A1-201ENST00000225964 ZNF7P17097 686 aaPredicted RBP13.54□□□□□ -0.24
COL1A1-201ENST00000225964 PEX5P50542 639 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 MAPK7Q13164 816 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 POM121L1PQ3SYA9 428 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SLC30A10Q6XR72 485 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 CYP4X1Q8N118 509 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SAMD3Q8N6K7 520 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 ENGASEQ8NFI3 743 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 MAGEB18Q96M61 343 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SH3GL3Q99963 347 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.54□□□□□ -0.24
COL1A1-201ENST00000225964 POLG2Q9UHN1 485 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 ACOT9Q9Y305 439 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 ACSL4O60488 711 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 MT-CO1P00395 513 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 THOP1P52888 689 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 PPP1R16AQ96I34 528 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 GANQ9H2C0 597 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 KRT6AP02538 564 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 KRT6BP04259 564 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 USP17L7P0C7H9 530 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 FMO4P31512 558 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 KRT6CP48668 564 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 MTA1Q13330 715 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 INSCQ1MX18 579 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 AGKQ53H12 422 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 TRAPPC5Q8IUR0 188 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 C19orf18Q8NEA5 215 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SYTL5Q8TDW5 730 aaPredicted RBP13.54□□□□□ -0.24
COL1A1-201ENST00000225964 TRAPPC12Q8WVT3 735 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 VPS33AQ96AX1 596 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 GMCL1Q96IK5 515 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 PACSIN1Q9BY11 444 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 CNOT3O75175 753 aaKnown RBP13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SEC22BO75396 215 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 KRT75O95678 551 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 KHDRBS1Q07666 443 aaKnown RBP eCLIP13.54□□□□□ -0.24
COL1A1-201ENST00000225964 TRIM25Q14258 630 aaKnown RBP13.54□□□□□ -0.24
COL1A1-201ENST00000225964 ALKBH2Q6NS38 261 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SLC27A1Q6PCB7 646 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 C11orf88Q6PI97 169 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 USP31Q70CQ4 1352 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 COLGALT2Q8IYK4 626 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 MOSPD2Q8NHP6 518 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 ATP8B4Q8TF62 1192 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SERHL2Q9H4I8 314 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SERHLQ9NQF3 203 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 SLC9A8Q9Y2E8 581 aa13.54□□□□□ -0.24
COL1A1-201ENST00000225964 DDTLA6NHG4 134 aaPredicted RBP13.53□□□□□ -0.24
COL1A1-201ENST00000225964 LACTBL1A8MY62 500 aa13.53□□□□□ -0.24
COL1A1-201ENST00000225964 CPA3P15088 417 aa13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms