RNA–Protein interactions for RNA: ENST00000162749.6

TNFRSF1A-201, Transcript of TNF receptor superfamily member 1A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TNFRSF1A, Length 2,223 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-201ENST00000162749 RBL1P28749 1068 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 CCR1P32246 355 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 RPL22P35268 128 aaKnown RBP20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 TPI1P60174 286 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 GNGT1P63211 74 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 HTRA4P83105 476 aaPredicted RBP20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 XRCC4Q13426 336 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 BRMS1LQ5PSV4 323 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 KDM7AQ6ZMT4 941 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 CCDC33Q8N5R6 958 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 SERPINB11Q96P15 392 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 EPB41L4BQ9H329 900 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 TPX2Q9ULW0 747 aaKnown RBP20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 SNX10Q9Y5X0 201 aa20.33■□□□□ 0.85
TNFRSF1A-201ENST00000162749 DCLK1O15075 740 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 KCNN4O15554 427 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 SEC24AO95486 1093 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 URODP06132 367 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PPM1AP35813 382 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 HCAR3P49019 387 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 TUFMP49411 452 aaKnown RBP20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PSEN1P49768 467 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 ATP1A2P50993 1020 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PMS2P54278 862 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 SLMAPQ14BN4 828 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 SPDYCQ5MJ68 293 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 RNASEH2BQ5TBB1 312 aaKnown RBP20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 CCDC25Q86WR0 208 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 VPS52Q8N1B4 723 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 RTP4Q96DX8 246 aa20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 TLR8Q9NR97 1041 aaKnown RBP20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 MTPAPQ9NVV4 582 aaKnown RBP eCLIP20.33■□□□□ 0.84
TNFRSF1A-201ENST00000162749 SLC38A8A6NNN8 435 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 HMGB1P1B2RPK0 211 aaPredicted RBP20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 EIF3HO15372 352 aaKnown RBP eCLIP20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 LRIG2O94898 1065 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 RARGP13631 454 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 ERCC2P18074 760 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 DNAJB2P25686 324 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PPP2R5DQ14738 602 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 SLC45A4Q5BKX6 768 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 RASIP1Q5U651 963 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 AUTS2Q8WXX7 1259 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PWWP2AQ96N64 755 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PABPC3Q9H361 631 aaKnown RBP20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 SEMA4AQ9H3S1 761 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 COMMD8Q9NX08 183 aa20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 FARP1Q9Y4F1 1045 aaPredicted RBP20.32■□□□□ 0.84
TNFRSF1A-201ENST00000162749 CFAP69A5D8W1 941 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 MORF4L2Q15014 288 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PAFAH1B3Q15102 231 aaKnown RBP20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 TMEM240Q5SV17 173 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 FAM182AQ5T1J6 154 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 TPGS2Q68CL5 300 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 CEP295NLQ96MC4 621 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 EPAS1Q99814 870 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 TTLL2Q9BWV7 592 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 TSPYL1Q9H0U9 437 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 OSBPL2Q9H1P3 480 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 LRRC4CQ9HCJ2 640 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 HSFX1Q9UBD0 423 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 MAGED2Q9UNF1 606 aaPredicted RBP20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PCDHB12Q9Y5F1 795 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 ZNF135P52742 658 aaPredicted RBP20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 NETO2Q8NC67 525 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 HAPLN3Q96S86 360 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 TLR6Q9Y2C9 796 aa20.31■□□□□ 0.84
TNFRSF1A-201ENST00000162749 KCNU1A8MYU2 1149 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PAGE1O75459 146 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 TBX18O95935 607 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 ZDHHC11BP0C7U3 371 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 NR1D1P20393 614 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 UBAP2Q5T6F2 1119 aaKnown RBP20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 BZW1Q7L1Q6 419 aaKnown RBP20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 CDKL3Q8IVW4 592 aaPredicted RBP20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 ZCCHC9Q8N567 271 aaKnown RBP20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 CPT1BQ92523 772 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 SLC39A13Q96H72 371 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 QKIQ96PU8 341 aaKnown RBP eCLIP20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 DNAJC17Q9NVM6 304 aaKnown RBP20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 SHOC2Q9UQ13 582 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 NEU3Q9UQ49 428 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PDE4DIPQ5VU43 2346 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 FGF18O76093 207 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 MYZAPP0CAP1 466 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 EPHB2P29323 1055 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 EFEMP1Q12805 493 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 C7orf61Q8IZ16 206 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 FIBCD1Q8N539 461 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 TAB3Q8N5C8 712 aaPredicted RBP20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 LGMNQ99538 433 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 ZBED2Q9BTP6 218 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 SIK2Q9H0K1 926 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 CYP4F11Q9HBI6 524 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 INSL6Q9Y581 213 aa20.3■□□□□ 0.84
TNFRSF1A-201ENST00000162749 RAB33AQ14088 237 aa20.29■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PSRC1Q6PGN9 363 aaPredicted RBP20.29■□□□□ 0.84
TNFRSF1A-201ENST00000162749 TP53INP2Q8IXH6 220 aa20.29■□□□□ 0.84
TNFRSF1A-201ENST00000162749 PRCCQ92733 491 aaPredicted RBP20.29■□□□□ 0.84
TNFRSF1A-201ENST00000162749 CLP1Q92989 425 aaKnown RBP20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms