RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 TBCBQ99426 244 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 NXF3Q9H4D5 531 aaKnown RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 CHD7Q9P2D1 2997 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 SDR42E2A6NKP2 422 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 E9PBE3 544 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 I3L4J1 428 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 KLHL41O60662 606 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 SNRPAP09012 282 aaKnown RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 CHRM1P11229 460 aaPredicted RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 ANPEPP15144 967 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 PSMB4P28070 264 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 KLC1Q07866 573 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 CDC16Q13042 620 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 STILQ15468 1287 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 TTC39BQ5VTQ0 682 aaPredicted RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 FAM156AQ8NDB6 213 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 TFB1MQ8WVM0 346 aaKnown RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 SSU72Q9NP77 194 aaKnown RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 LTBP3Q9NS15 1303 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 TPH1P17752 444 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 VHLP40337 213 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 SOX4Q06945 474 aaPredicted RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 ITGA9Q13797 1035 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 FBXL19Q6PCT2 694 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 PCGF5Q86SE9 256 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 CFAP61Q8NHU2 1237 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 SLC35F5Q8WV83 523 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 TMEM40Q8WWA1 233 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 MFSD3Q96ES6 412 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 KIF12Q96FN5 646 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 OR52B2Q96RD2 323 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 XAB2Q9HCS7 855 aaKnown RBP11.03□□□□□ -0.64
USP28-201ENST00000003302 HOXC10Q9NYD6 342 aa11.03□□□□□ -0.64
USP28-201ENST00000003302 ACADSP16219 412 aa11.02□□□□□ -0.64
USP28-201ENST00000003302 OAZ1P54368 228 aa11.02□□□□□ -0.64
USP28-201ENST00000003302 AQP4P55087 323 aa11.02□□□□□ -0.64
USP28-201ENST00000003302 SLC9B1Q4ZJI4 515 aa11.02□□□□□ -0.64
USP28-201ENST00000003302 MAMDC4Q6UXC1 1216 aa11.02□□□□□ -0.64
USP28-201ENST00000003302 PTAR1Q7Z6K3 402 aaPredicted RBP11.02□□□□□ -0.64
USP28-201ENST00000003302 ZNF781Q8N8C0 355 aa11.02□□□□□ -0.64
USP28-201ENST00000003302 SLC45A3Q96JT2 553 aa11.02□□□□□ -0.64
USP28-201ENST00000003302 EBNA1BP2Q99848 306 aaKnown RBP11.02□□□□□ -0.64
USP28-201ENST00000003302 STX18Q9P2W9 335 aaKnown RBP11.02□□□□□ -0.64
USP28-201ENST00000003302 ASB3Q9Y575 518 aa11.02□□□□□ -0.64
USP28-201ENST00000003302 SBF1O95248 1867 aa11.02□□□□□ -0.64
USP28-201ENST00000003302 FAM159BA6NKW6 160 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 H0YCG3 227 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 CHADO15335 359 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 DCXO43602 365 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 DKC1O60832 514 aaKnown RBP eCLIP11.02□□□□□ -0.65
USP28-201ENST00000003302 CACNA2D1P54289 1103 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 MXRA7P84157 204 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 CCNIQ14094 377 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 PPP2R5DQ14738 602 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 DALRD3Q5D0E6 543 aaKnown RBP11.02□□□□□ -0.65
USP28-201ENST00000003302 MARCH8Q5T0T0 291 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 ZBTB8OSQ8IWT0 167 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 SCUBE1Q8IWY4 988 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 FAM110BQ8TC76 370 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 RHOBTB2Q9BYZ6 727 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 IQCGQ9H095 443 aaKnown RBP11.02□□□□□ -0.65
USP28-201ENST00000003302 DPP3Q9NY33 737 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 GMPR2Q9P2T1 348 aaKnown RBP11.02□□□□□ -0.65
USP28-201ENST00000003302 EFR3BQ9Y2G0 817 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 PPME1Q9Y570 386 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 APOL1O14791 398 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 SIN3BO75182 1162 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 DGKIO75912 1065 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 ATP5HO75947 161 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 DNERQ8NFT8 737 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 MOCS1Q9NZB8 636 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 BRCA1P38398 1863 aaKnown RBP11.02□□□□□ -0.65
USP28-201ENST00000003302 TMEM233B4DJY2 109 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 DDNO94850 711 aaPredicted RBP11.02□□□□□ -0.65
USP28-201ENST00000003302 HOXA11P31270 313 aaPredicted RBP11.02□□□□□ -0.65
USP28-201ENST00000003302 STIP1P31948 543 aaKnown RBP11.02□□□□□ -0.65
USP28-201ENST00000003302 ADCYAP1R1P41586 468 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 EFNA5P52803 228 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 C1orf146Q5VVC0 180 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 LCLAT1Q6UWP7 414 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 AFG1LQ8WV93 481 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 FAM49AQ9H0Q0 323 aaPredicted RBP11.02□□□□□ -0.65
USP28-201ENST00000003302 ASNSD1Q9NWL6 643 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 BARX2Q9UMQ3 279 aaPredicted RBP11.02□□□□□ -0.65
USP28-201ENST00000003302 MTO1Q9Y2Z2 717 aaKnown RBP11.02□□□□□ -0.65
USP28-201ENST00000003302 USP3Q9Y6I4 520 aa11.02□□□□□ -0.65
USP28-201ENST00000003302 NEMP1O14524 444 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 TSPAN1O60635 241 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 SMIM24O75264 130 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 POLE2P56282 527 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 ENPEPQ07075 957 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 TMEM132DQ14C87 1099 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 NPWQ8N729 165 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 BATF3Q9NR55 127 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 TNFSF13BQ9Y275 285 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 SAT1P21673 171 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 DPP6P42658 865 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 YBX1P67809 324 aaKnown RBP11.01□□□□□ -0.65
USP28-201ENST00000003302 KIAA0319Q5VV43 1072 aa11.01□□□□□ -0.65
USP28-201ENST00000003302 TTC13Q8NBP0 860 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms