RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ARHGEF38Q9NXL2 777 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 MTRF1LQ9UGC7 380 aaKnown RBP17.46■□□□□ 0.39
CLN3-252ENST00000636907 SNX10Q9Y5X0 201 aa17.46■□□□□ 0.39
CLN3-252ENST00000636907 ZNF638Q14966 1978 aaKnown RBP17.46■□□□□ 0.39
CLN3-252ENST00000636907 RARGP13631 454 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 GPS1Q13098 491 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 IZUMO3Q5VZ72 239 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 TPGS2Q68CL5 300 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 FAM71DQ8N9W8 422 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 SERPINB11Q96P15 392 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 TXLNGYQ9BZA5 131 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 PRDM16Q9HAZ2 1276 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 TLR8Q9NR97 1041 aaKnown RBP17.45■□□□□ 0.38
CLN3-252ENST00000636907 MTPAPQ9NVV4 582 aaKnown RBP eCLIP17.45■□□□□ 0.38
CLN3-252ENST00000636907 CLIC5Q9NZA1 410 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 OGFRQ9NZT2 677 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 INSL6Q9Y581 213 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 PPFIA2O75334 1257 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 FGF18O76093 207 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 NR2C2P49116 596 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 PSEN1P49768 467 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 TPI1P60174 286 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 RAB33AQ14088 237 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 BRMS1LQ5PSV4 323 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 BBOF1Q8ND07 529 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 LRRN4Q8WUT4 740 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 TTLL2Q9BWV7 592 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 ADAM7Q9H2U9 754 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 DTLQ9NZJ0 730 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 HSFX1Q9UBD0 423 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 ANAPC5Q9UJX4 755 aa17.45■□□□□ 0.38
CLN3-252ENST00000636907 MAGED2Q9UNF1 606 aaPredicted RBP17.45■□□□□ 0.38
CLN3-252ENST00000636907 DNALI1O14645 258 aaPredicted RBP17.44■□□□□ 0.38
CLN3-252ENST00000636907 DCLK1O15075 740 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 MFSD11O43934 449 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 ZDHHC11BP0C7U3 371 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 CCR1P32246 355 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 HSD17B3P37058 310 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 GGCXP38435 758 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 HCAR3P49019 387 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 NRLP54845 237 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 CAV1Q03135 178 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 EFEMP1Q12805 493 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 PPP2R5DQ14738 602 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 UAP1Q16222 522 aaPredicted RBP17.44■□□□□ 0.38
CLN3-252ENST00000636907 HERC6Q8IVU3 1022 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 CCDC33Q8N5R6 958 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 HERVK_113Q902F9 699 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 CLP1Q92989 425 aaKnown RBP17.44■□□□□ 0.38
CLN3-252ENST00000636907 CEP295NLQ96MC4 621 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 ZBP1Q9H171 429 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 OSBPL2Q9H1P3 480 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 ACBD3Q9H3P7 528 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 CYP4F11Q9HBI6 524 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 USP29Q9HBJ7 922 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 MRPL17Q9NRX2 175 aaKnown RBP17.44■□□□□ 0.38
CLN3-252ENST00000636907 OR12D3Q9UGF7 316 aa17.44■□□□□ 0.38
CLN3-252ENST00000636907 BCLAF3A2AJT9 711 aaKnown RBP17.43■□□□□ 0.38
CLN3-252ENST00000636907 LILRB3O75022 631 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 TBX18O95935 607 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 ERCC2P18074 760 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 RBL1P28749 1068 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 STIP1P31948 543 aaKnown RBP17.43■□□□□ 0.38
CLN3-252ENST00000636907 RPL22P35268 128 aaKnown RBP17.43■□□□□ 0.38
CLN3-252ENST00000636907 XRCC4Q13426 336 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 HIBCHQ6NVY1 386 aaPredicted RBP17.43■□□□□ 0.38
CLN3-252ENST00000636907 CDKL3Q8IVW4 592 aaPredicted RBP17.43■□□□□ 0.38
CLN3-252ENST00000636907 OLFM3Q96PB7 478 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 HAPLN3Q96S86 360 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 EPAS1Q99814 870 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 ZMYND8Q9ULU4 1186 aaPredicted RBP17.43■□□□□ 0.38
CLN3-252ENST00000636907 TPX2Q9ULW0 747 aaKnown RBP17.43■□□□□ 0.38
CLN3-252ENST00000636907 ATP8A1Q9Y2Q0 1164 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 YIPF1Q9Y548 306 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 SLC4A7Q9Y6M7 1214 aa17.43■□□□□ 0.38
CLN3-252ENST00000636907 LCHNA4D1U4 455 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 GOLGA6BA6NDN3 693 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 KCNU1A8MYU2 1149 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 AGPSO00116 658 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 KCNN4O15554 427 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 PAGE1O75459 146 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 LRIG2O94898 1065 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 CHKAP35790 457 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 ZNF135P52742 658 aaPredicted RBP17.42■□□□□ 0.38
CLN3-252ENST00000636907 FAM193AP78312 1265 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 PAFAH1B3Q15102 231 aaKnown RBP17.42■□□□□ 0.38
CLN3-252ENST00000636907 CFAP58Q5T655 872 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 ALS2CLQ60I27 953 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 GPR65Q8IYL9 337 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 IQCKQ8N0W5 287 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 KLHL23Q8NBE8 558 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 NETO2Q8NC67 525 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 SP7Q8TDD2 431 aaPredicted RBP17.42■□□□□ 0.38
CLN3-252ENST00000636907 SLC39A13Q96H72 371 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 ZIM3Q96PE6 472 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 QKIQ96PU8 341 aaKnown RBP eCLIP17.42■□□□□ 0.38
CLN3-252ENST00000636907 RAD9AQ99638 391 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 UBE2OQ9C0C9 1292 aaKnown RBP17.42■□□□□ 0.38
CLN3-252ENST00000636907 SIK2Q9H0K1 926 aa17.42■□□□□ 0.38
CLN3-252ENST00000636907 OLA1Q9NTK5 396 aaKnown RBP17.42■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms