RNA–Protein interactions for RNA: ENST00000620786.4

CLIP1-219, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CLIP1, Length 5,913 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-219ENST00000620786 XRCC4Q13426 336 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 WSCD1Q658N2 575 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 NLRP9Q7RTR0 991 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 GRIN3AQ8TCU5 1115 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ZNF606Q8WXB4 792 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ERP27Q96DN0 273 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 PORCNQ9H237 461 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 MARCH2Q9P0N8 246 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 SYNPO2Q9UMS6 1093 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ADH1AP07327 375 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 YBX3P16989 372 aaKnown RBP eCLIP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ZNF7P17097 686 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 AMPD1P23109 780 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 RPS7P62081 194 aaKnown RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 TMEM119Q4V9L6 283 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ARMC12Q5T9G4 340 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 USP45Q70EL2 814 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 ZNF571Q7Z3V5 609 aaPredicted RBP11.67□□□□□ -0.54
CLIP1-219ENST00000620786 NECAB2Q7Z6G3 386 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 PLD3Q8IV08 490 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 FAM9CQ8IZT9 166 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 INPP5DQ92835 1189 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 SERPINB12Q96P63 405 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 DNMT3LQ9UJW3 386 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 DEPDC5O75140 1603 aa11.67□□□□□ -0.54
CLIP1-219ENST00000620786 EIF4E1BA6NMX2 242 aaKnown RBP11.66□□□□□ -0.54
CLIP1-219ENST00000620786 PTPN1P18031 435 aaKnown RBP11.66□□□□□ -0.54
CLIP1-219ENST00000620786 RRM2P31350 389 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 SERPINB5P36952 375 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 NUDT2P50583 147 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 MPP3Q13368 585 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 USP41Q3LFD5 358 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 ADCK1Q86TW2 530 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 CYP4Z1Q86W10 505 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 FAM163AQ96GL9 167 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-219ENST00000620786 ULBP1Q9BZM6 244 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 UNKQ9C0B0 810 aaKnown RBP11.66□□□□□ -0.54
CLIP1-219ENST00000620786 AHSPQ9NZD4 102 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 WHRNQ9P202 907 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 VPS51Q9UID3 782 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 PCDHAC2Q9Y5I4 1007 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 B2RBV5 119 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 ANKRD63C9JTQ0 380 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 EML1O00423 815 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 LTFP02788 710 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 CD52P31358 61 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 HNRNPH2P55795 449 aaKnown RBP11.66□□□□□ -0.54
CLIP1-219ENST00000620786 PLOD1Q02809 727 aaPredicted RBP11.66□□□□□ -0.54
CLIP1-219ENST00000620786 SUGP1Q8IWZ8 645 aaKnown RBP11.66□□□□□ -0.54
CLIP1-219ENST00000620786 GALNT4Q8N4A0 578 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 LZTR1Q8N653 840 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 ENGASEQ8NFI3 743 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 NAT9Q9BTE0 207 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 OSBPL1AQ9BXW6 950 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 OSGEPQ9NPF4 335 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 TRPC4Q9UBN4 977 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 SERPINB10P48595 397 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 CDH17Q12864 832 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 NKX2-3Q8TAU0 364 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 CASKIN2Q8WXE0 1202 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 CNDP1Q96KN2 507 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 PURBQ96QR8 312 aaKnown RBP11.66□□□□□ -0.54
CLIP1-219ENST00000620786 TMEM134Q9H6X4 195 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 PLAGL2Q9UPG8 496 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 MOXD2PA6NHM9 499 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 ZNF839A8K0R7 811 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 SERPINA4P29622 427 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 DGKZQ13574 1117 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 HECTD3Q5T447 861 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 ZIM3Q96PE6 472 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 SPATS2LQ9NUQ6 558 aaKnown RBP11.66□□□□□ -0.54
CLIP1-219ENST00000620786 SCN3BQ9NY72 215 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 RAD54BQ9Y620 910 aa11.66□□□□□ -0.54
CLIP1-219ENST00000620786 MAGEB16A2A368 324 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 CYP3A4P08684 503 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 TREML2Q5T2D2 321 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 BTNL9Q6UXG8 535 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 MAP4K3Q8IVH8 894 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 ARID3BQ8IVW6 561 aaPredicted RBP11.65□□□□□ -0.54
CLIP1-219ENST00000620786 PPP1R10Q96QC0 940 aaKnown RBP11.65□□□□□ -0.54
CLIP1-219ENST00000620786 TSC22D3Q99576 134 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 SMAD5Q99717 465 aaKnown RBP11.65□□□□□ -0.54
CLIP1-219ENST00000620786 BLOC1S6Q9UL45 172 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 KATNA1O75449 491 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 SERPINI2O75830 405 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 WDR47O94967 919 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 BMP10O95393 424 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 CNTFP26441 200 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 CASP7P55210 303 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 IYDQ6PHW0 289 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 AGGF1Q8N302 714 aaeCLIP11.65□□□□□ -0.54
CLIP1-219ENST00000620786 CAMKK1Q8N5S9 505 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 VIPAS39Q9H9C1 493 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 ZCCHC17Q9NP64 241 aaKnown RBP11.65□□□□□ -0.54
CLIP1-219ENST00000620786 USE1Q9NZ43 259 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 ACOT9Q9Y305 439 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 RASSF10A6NK89 507 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 RAD51BO15315 384 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 TPBGLP0DKB5 382 aa11.65□□□□□ -0.54
CLIP1-219ENST00000620786 MMP13P45452 471 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms