RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 MARCH2Q9P0N8 246 aa10.49□□□□□ -0.73
UPF1-213ENST00000601981 SORCS3Q9UPU3 1222 aa10.49□□□□□ -0.73
UPF1-213ENST00000601981 TICRRQ7Z2Z1 1910 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 TCRBV5S1A1TA0A578 114 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 TMEM110-MUSTN1A8MSY1 372 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 MYO1FO00160 1098 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 LEFTY2O00292 366 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 NRG2O14511 850 aaPredicted RBP10.48□□□□□ -0.73
UPF1-213ENST00000601981 SPOPO43791 374 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 CEP104O60308 925 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 PROSCO94903 275 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 PRAMEF12O95522 483 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 FCARP24071 287 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 NOS2P35228 1153 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 VIPR2P41587 438 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 IFNAR2P48551 515 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 PFKPQ01813 784 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 C2orf54Q08AI8 447 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 USP4Q13107 963 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 NNTQ13423 1086 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 TDGQ13569 410 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 DCAF6Q58WW2 860 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 TANGO2Q6ICL3 276 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 MSANTD2Q6P1R3 559 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 SND1Q7KZF4 910 aaKnown RBP eCLIP10.48□□□□□ -0.73
UPF1-213ENST00000601981 ARCQ7LC44 396 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 BHLHA9Q7RTU4 235 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 MTERF4Q7Z6M4 381 aaKnown RBP10.48□□□□□ -0.73
UPF1-213ENST00000601981 RNF135Q8IUD6 432 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 UBALD2Q8IYN6 164 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 NDRG1Q92597 394 aaKnown RBP10.48□□□□□ -0.73
UPF1-213ENST00000601981 IRF7Q92985 503 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 PLD4Q96BZ4 506 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 MS4A14Q96JA4 679 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 SLC22A12Q96S37 553 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 NAP1L3Q99457 506 aaPredicted RBP10.48□□□□□ -0.73
UPF1-213ENST00000601981 DCLK3Q9C098 648 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 RNF38Q9H0F5 515 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 SMG9Q9H0W8 520 aaKnown RBP10.48□□□□□ -0.73
UPF1-213ENST00000601981 SMOC2Q9H3U7 446 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 BRD9Q9H8M2 597 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 OSER1Q9NX31 292 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 SMPD4Q9NXE4 827 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP10.48□□□□□ -0.73
UPF1-213ENST00000601981 TBC1D14Q9P2M4 693 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 TJP2Q9UDY2 1190 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 TMEM59LQ9UK28 342 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 NUDT5Q9UKK9 219 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 RAB21Q9UL25 225 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 ZNF510Q9Y2H8 683 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 HBS1LQ9Y450 684 aaKnown RBP10.48□□□□□ -0.73
UPF1-213ENST00000601981 PCDHA3Q9Y5H8 950 aa10.48□□□□□ -0.73
UPF1-213ENST00000601981 SLC12A8A0AV02 714 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 E2F8A0AVK6 867 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 CHADO15335 359 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 GRAP2O75791 330 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 GABBR2O75899 941 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 TBX18O95935 607 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 ASGR2P07307 311 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 IRF1P10914 325 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 SLC2A3P11169 496 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 SRFP11831 508 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 KRT3P12035 628 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 MCM3P25205 808 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 MATKP42679 507 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 HARS2P49590 506 aaKnown RBP10.47□□□□□ -0.73
UPF1-213ENST00000601981 PEX5P50542 639 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 RNASE9P60153 205 aaKnown RBP10.47□□□□□ -0.73
UPF1-213ENST00000601981 FCHO2Q0JRZ9 810 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 MTA1Q13330 715 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 BRD3Q15059 726 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 PDGFRLQ15198 375 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 ZNF77Q15935 545 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 GLE1Q53GS7 698 aaKnown RBP10.47□□□□□ -0.73
UPF1-213ENST00000601981 PPP1R15BQ5SWA1 713 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 DCAF12L1Q5VU92 463 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 NUGGCQ68CJ6 796 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 DCUN1D2Q6PH85 259 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 FBXO38Q6PIJ6 1188 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 VITQ6UXI7 678 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 HFE2Q6ZVN8 426 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 UNC45BQ8IWX7 931 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 DEFB106AQ8N104 65 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 SLC44A3Q8N4M1 653 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 CSGALNACT1Q8TDX6 532 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 OTUB2Q96DC9 234 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 BTBD6Q96KE9 485 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 SLC2A13Q96QE2 648 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 KLF16Q9BXK1 252 aaPredicted RBP10.47□□□□□ -0.73
UPF1-213ENST00000601981 PARD6BQ9BYG5 372 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 FAM204AQ9H8W3 233 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 METTL5Q9NRN9 209 aaKnown RBP10.47□□□□□ -0.73
UPF1-213ENST00000601981 RBM12Q9NTZ6 932 aaKnown RBP10.47□□□□□ -0.73
UPF1-213ENST00000601981 SMARCAL1Q9NZC9 954 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 CFAP97Q9P2B7 532 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 IP6K2Q9UHH9 426 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 SLC12A6Q9UHW9 1150 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 CCL26Q9Y258 94 aa10.47□□□□□ -0.73
UPF1-213ENST00000601981 TMEM191CA6NGB0 347 aa10.46□□□□□ -0.73
UPF1-213ENST00000601981 CCDC188H7C350 402 aa10.46□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms