RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 CKAP5Q14008 2032 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 AHCTF1Q8WYP5 2266 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 LRBAP50851 2863 aa9.08□□□□□ -0.96
SHKBP1-220ENST00000599716 A0A1B0GTW7 788 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 TULP2O00295 520 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 ACTN4O43707 911 aaKnown RBP9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 CILPO75339 1184 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 PENKP01210 267 aaPredicted RBP9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 GNSP15586 552 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 ACSL1P33121 698 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 DPP6P42658 865 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 PLA2G4AP47712 749 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 ME1P48163 572 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 CSNK1EP49674 416 aaKnown RBP9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 NUMBP49757 651 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 KIF11P52732 1056 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 STARD3Q14849 445 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 SGSM1Q2NKQ1 1148 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 HLA-BQ31612 363 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 PREPLQ4J6C6 727 aaPredicted RBP9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 KCNT1Q5JUK3 1230 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 WDR45BQ5MNZ6 344 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 RESP18Q5W5W9 173 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 CCNI2Q6ZMN8 369 aaPredicted RBP9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 SCUBE3Q8IX30 993 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 CYB5D2Q8WUJ1 264 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 SIPA1Q96FS4 1042 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 PAGE5Q96GU1 130 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 ZNF396Q96N95 335 aaPredicted RBP9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 ARID3AQ99856 593 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 ITM2CQ9NQX7 267 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 TM7SF3Q9NS93 570 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 EXOC1Q9NV70 894 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 COMMD8Q9NX08 183 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 USP36Q9P275 1121 aaKnown RBP9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 THAP10Q9P2Z0 257 aaPredicted RBP9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 FBXO10Q9UK96 956 aa9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.07□□□□□ -0.96
SHKBP1-220ENST00000599716 A0A1B0GVL5 298 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 PVALEFA0A1B0GWK0 134 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 SLC12A8A0AV02 714 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 K7ELQ4 463 aaPredicted RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 CBX4O00257 560 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 BCAT2O15382 392 aaPredicted RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 SYNCRIPO60506 623 aaKnown RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 WISP1O95388 367 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 YEATS4O95619 227 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 EPHX1P07099 455 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 PDIA4P13667 645 aaKnown RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 P4HA1P13674 534 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 MATKP42679 507 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 ABCG1P45844 678 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 SGSHP51688 502 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 VAMP7P51809 220 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 SNRPFP62306 86 aaKnown RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 CFHR1Q03591 330 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 DNM1Q05193 864 aaKnown RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 GOLGA8FQ08AF8 430 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 GOLGA8DPQ0D2H9 430 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 INCA1Q0VD86 236 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 KIF19Q2TAC6 998 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 PRAMEF14Q5SWL7 426 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 RABEPKQ7Z6M1 372 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 UNC93AQ86WB7 457 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 ZC3H3Q8IXZ2 948 aaKnown RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 RBBP8NLQ8NC74 664 aaPredicted RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 RHBDD1Q8TEB9 315 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 DDI1Q8WTU0 396 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 DNASE2BQ8WZ79 361 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 PRCCQ92733 491 aaPredicted RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 SEMA4DQ92854 862 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 FOXJ1Q92949 421 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 INTS4Q96HW7 963 aaKnown RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 PIWIL1Q96J94 861 aaKnown RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 DUSP9Q99956 384 aaKnown RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 NT5C1AQ9BXI3 368 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 FAM124BQ9H5Z6 455 aaPredicted RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 ELOVL2Q9NXB9 296 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 FAM13BQ9NYF5 915 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 SUSD2Q9UGT4 822 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 PCDHA5Q9Y5H7 936 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 SNX11Q9Y5W9 270 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 MUC22E2RYF6 1773 aaPredicted RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 PLXNA2O75051 1894 aa9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 TP53BP1Q12888 1972 aaPredicted RBP9.06□□□□□ -0.96
SHKBP1-220ENST00000599716 METTL12A8MUP2 240 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 GFRA2O00451 464 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 PIK3R2O00459 728 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 MSI1O43347 362 aaKnown RBP9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 CALCAP01258 141 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 RPN1P04843 607 aaKnown RBP9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 HLA-FP30511 346 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 AP3M2P53677 418 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 CYP4F3Q08477 520 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 SLC14A1Q13336 389 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 SERPINA13PQ6UXR4 307 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 RSRC2Q7L4I2 434 aaKnown RBP9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 BHLHA9Q7RTU4 235 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 CCDC186Q7Z3E2 898 aa9.05□□□□□ -0.96
SHKBP1-220ENST00000599716 ANKS1BQ7Z6G8 1248 aa9.05□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms