RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 CFAP36Q96G28 342 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 ELAC2Q9BQ52 826 aaKnown RBP14.95□□□□□ -0.02
VRK3-217ENST00000599538 PRDM12Q9H4Q4 367 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 RGS18Q9NS28 235 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP14.95□□□□□ -0.02
VRK3-217ENST00000599538 RCOR3Q9P2K3 495 aaPredicted RBP14.95□□□□□ -0.02
VRK3-217ENST00000599538 GRID1Q9ULK0 1009 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 PTPRDP23468 1912 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 A0A1W2PQ45 241 aaPredicted RBP14.95□□□□□ -0.02
VRK3-217ENST00000599538 A0A1W2PQY0 241 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 H3BRJ5 948 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 DCLK1O15075 740 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 CAPN15O75808 1086 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 CABYRO75952 493 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 ERCC2P18074 760 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 FOXN2P32314 431 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 AP1B1Q10567 949 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 SEMA3BQ13214 749 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 ANKRD20A2Q5SQ80 823 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 ANKRD20A1Q5TYW2 823 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 GKAP1Q5VSY0 366 aaPredicted RBP14.95□□□□□ -0.02
VRK3-217ENST00000599538 ANKRD20A3Q5VUR7 823 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 BSPRYQ5W0U4 402 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 C10orf67Q8IYJ2 551 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 VPS52Q8N1B4 723 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 P2RY11Q96G91 374 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 SUSD3Q96L08 255 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 KLF6Q99612 283 aaPredicted RBP14.95□□□□□ -0.02
VRK3-217ENST00000599538 FGFR1OP2Q9NVK5 253 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 PIH1D1Q9NWS0 290 aaKnown RBP14.95□□□□□ -0.02
VRK3-217ENST00000599538 DNAJB4Q9UDY4 337 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 FBXW11Q9UKB1 542 aa14.95□□□□□ -0.02
VRK3-217ENST00000599538 FAM47DPA6NHR8 397 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 FAM155BO75949 473 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 INHAP05111 366 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 RPA3P35244 121 aaPredicted RBP14.94□□□□□ -0.02
VRK3-217ENST00000599538 PM20D1Q6GTS8 502 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 DCLRE1AQ6PJP8 1040 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 PIGWQ7Z7B1 504 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 TAC4Q86UU9 113 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 CACNA2D3Q8IZS8 1091 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 NPWQ8N729 165 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 DENND1AQ8TEH3 1009 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 COLEC11Q9BWP8 271 aa14.94□□□□□ -0.02
VRK3-217ENST00000599538 C12orf65Q9H3J6 166 aaKnown RBP14.94□□□□□ -0.02
VRK3-217ENST00000599538 CXorf49A8MYA2 514 aaPredicted RBP14.93□□□□□ -0.02
VRK3-217ENST00000599538 GOLGA8RI6L899 631 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 KRT4P19013 534 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 STX2P32856 288 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 PRKD1Q15139 912 aaPredicted RBP14.93□□□□□ -0.02
VRK3-217ENST00000599538 RASA2Q15283 850 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 SLC1A5Q15758 541 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 ZKSCAN8Q15776 578 aaPredicted RBP14.93□□□□□ -0.02
VRK3-217ENST00000599538 CCNYQ8ND76 341 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 DEPDC1BQ8WUY9 529 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 PGAP3Q96FM1 320 aaPredicted RBP14.93□□□□□ -0.02
VRK3-217ENST00000599538 CABS1Q96KC9 395 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 SLC9A7Q96T83 725 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 PAIP2Q9BPZ3 127 aaKnown RBP14.93□□□□□ -0.02
VRK3-217ENST00000599538 DMAP1Q9NPF5 467 aaPredicted RBP14.93□□□□□ -0.02
VRK3-217ENST00000599538 NKIRAS1Q9NYS0 192 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 TTLL3Q9Y4R7 772 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 A0A0A0MRY4 1105 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 RNF103O00237 685 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 TYROBPO43914 113 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 ASMTLO95671 621 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 MSH2P43246 934 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 MAGEA3P43357 314 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 DSC1Q08554 894 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 WASHC5Q12768 1159 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 PAFAH1B3Q15102 231 aaKnown RBP14.93□□□□□ -0.02
VRK3-217ENST00000599538 KLHL38Q2WGJ6 581 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 NUGGCQ68CJ6 796 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 PPP1R21Q6ZMI0 780 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 ARHGEF18Q6ZSZ5 1173 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 SLC24A5Q71RS6 500 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 COLGALT1Q8NBJ5 622 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 SPOCK2Q92563 424 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 NTAN1Q96AB6 310 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 SIGLEC10Q96LC7 697 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 SPATA13Q96N96 652 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 TKTL2Q9H0I9 626 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 STARD7Q9NQZ5 370 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 SMYD2Q9NRG4 433 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 SEPT10Q9P0V9 454 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 ZC3H7BQ9UGR2 993 aaKnown RBP14.93□□□□□ -0.02
VRK3-217ENST00000599538 PRG3Q9Y2Y8 225 aaPredicted RBP14.93□□□□□ -0.02
VRK3-217ENST00000599538 MRPL42Q9Y6G3 142 aaKnown RBP14.93□□□□□ -0.02
VRK3-217ENST00000599538 SQORQ9Y6N5 450 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 TET1Q8NFU7 2136 aa14.93□□□□□ -0.02
VRK3-217ENST00000599538 MOXD2PA6NHM9 499 aa14.92□□□□□ -0.02
VRK3-217ENST00000599538 KCNK1O00180 336 aa14.92□□□□□ -0.02
VRK3-217ENST00000599538 INPPL1O15357 1258 aa14.92□□□□□ -0.02
VRK3-217ENST00000599538 SKIP12755 728 aa14.92□□□□□ -0.02
VRK3-217ENST00000599538 HOXD10P28358 340 aa14.92□□□□□ -0.02
VRK3-217ENST00000599538 YWHAHQ04917 246 aaPredicted RBP14.92□□□□□ -0.02
VRK3-217ENST00000599538 SCAPQ12770 1279 aa14.92□□□□□ -0.02
VRK3-217ENST00000599538 NR1H3Q13133 447 aa14.92□□□□□ -0.02
VRK3-217ENST00000599538 SEMA5AQ13591 1074 aa14.92□□□□□ -0.02
VRK3-217ENST00000599538 GPNMBQ14956 572 aa14.92□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms