RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 FAM71BQ8TC56 605 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 ZNF670Q9BS34 389 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 CARD6Q9BX69 1037 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 RNF38Q9H0F5 515 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 MTMR10Q9NXD2 777 aa15.2■□□□□ 0.02
VRK3-212ENST00000596814 PRRC2BQ5JSZ5 2229 aaKnown RBP15.19■□□□□ 0.02
VRK3-212ENST00000596814 HELZP42694 1942 aaKnown RBP15.19■□□□□ 0.02
VRK3-212ENST00000596814 TRAV19A0A0A6YYK7 116 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 KCNU1A8MYU2 1149 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 RIOK3O14730 519 aaKnown RBP15.19■□□□□ 0.02
VRK3-212ENST00000596814 MBL2P11226 248 aaPredicted RBP15.19■□□□□ 0.02
VRK3-212ENST00000596814 PFKLP17858 780 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 DDX6P26196 483 aaKnown RBP eCLIP15.19■□□□□ 0.02
VRK3-212ENST00000596814 COG7P83436 770 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 ARHGAP15Q53QZ3 475 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 PRPF38BQ5VTL8 546 aaKnown RBP15.19■□□□□ 0.02
VRK3-212ENST00000596814 KAZNQ674X7 775 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 NUGGCQ68CJ6 796 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 TMC5Q6UXY8 1006 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 TMEM184AQ6ZMB5 413 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 ZNF572Q7Z3I7 529 aaPredicted RBP15.19■□□□□ 0.02
VRK3-212ENST00000596814 PYROXD2Q8N2H3 581 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 ARL14EPQ8N8R7 260 aaPredicted RBP15.19■□□□□ 0.02
VRK3-212ENST00000596814 MAB21L3Q8N8X9 362 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 ATP6V0D2Q8N8Y2 350 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 PLD4Q96BZ4 506 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 TCEAL4Q96EI5 215 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 HAPLN3Q96S86 360 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 HERPUD2Q9BSE4 406 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 HEMGNQ9BXL5 484 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 MAGEB5Q9BZ81 275 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 SLC12A6Q9UHW9 1150 aa15.19■□□□□ 0.02
VRK3-212ENST00000596814 ZNF487B1APH4 448 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 NRG2O14511 850 aaPredicted RBP15.18■□□□□ 0.02
VRK3-212ENST00000596814 ZNF197O14709 1029 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 LINC01565O15544 149 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 PAGE1O75459 146 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 CKMP06732 381 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 KRT10P13645 584 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 HDCP19113 662 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 ARL4AP40617 200 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 NTHL1P78549 312 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 MMRN1Q13201 1228 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 MTA1Q13330 715 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 SLC5A9Q2M3M2 681 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 PRSS36Q5K4E3 855 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 RARS2Q5T160 578 aaKnown RBP15.18■□□□□ 0.02
VRK3-212ENST00000596814 STXBP5Q5T5C0 1151 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 GPR158Q5T848 1215 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 ADAT2Q7Z6V5 191 aaKnown RBP15.18■□□□□ 0.02
VRK3-212ENST00000596814 UNC45BQ8IWX7 931 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 MAIP1Q8WWC4 291 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 TSC1Q92574 1164 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 SLC22A12Q96S37 553 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 RCOR3Q9P2K3 495 aaPredicted RBP15.18■□□□□ 0.02
VRK3-212ENST00000596814 EFR3BQ9Y2G0 817 aa15.18■□□□□ 0.02
VRK3-212ENST00000596814 GOLGA6L10A0A0M3HER8 536 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 CTAGE15A4D2H0 777 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 H3BRJ5 948 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 SOX1O00570 391 aaPredicted RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 MOSPD3O75425 235 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 TJP3O95049 919 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 SLU7O95391 586 aaKnown RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 CTAGE8P0CG41 777 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 KCNQ1P51787 676 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 ZNF135P52742 658 aaPredicted RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 SEMA3BQ13214 749 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 TEAD2Q15562 447 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 ANKRD54Q6NXT1 300 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 CTAGE6Q86UF2 777 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 RFX6Q8HWS3 928 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 CTAGE4Q8IX94 777 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 FAF2Q96CS3 445 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 RPGRIP1Q96KN7 1286 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 BTN2A3PQ96KV6 586 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 CYP2S1Q96SQ9 504 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 EPAS1Q99814 870 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 KLF16Q9BXK1 252 aaPredicted RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 MAK16Q9BXY0 300 aaKnown RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 OSBPL2Q9H1P3 480 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 XPO7Q9UIA9 1087 aaKnown RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 MTCH2Q9Y6C9 303 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 CLUHO75153 1309 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 TCRBV7S2A1N4TA0A589 114 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 EEF2KO00418 725 aaKnown RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 KRIT1O00522 736 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 CREB3O43889 395 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 IRF1P10914 325 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 GOT1P17174 413 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 IL4RP24394 825 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 GGCXP38435 758 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 HARS2P49590 506 aaKnown RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 TPI1P60174 286 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 SLC7A9P82251 487 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 KLF1Q13351 362 aaPredicted RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 ANKRD20A8PQ5CZ79 823 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 SPATA4Q8NEY3 305 aa15.17■□□□□ 0.02
VRK3-212ENST00000596814 TRAF3IP1Q8TDR0 691 aaPredicted RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 ZFRQ96KR1 1074 aaKnown RBP15.17■□□□□ 0.02
VRK3-212ENST00000596814 CSPG4P5Q96PW8 444 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 19.4 ms