RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 THOC3Q96J01 351 aaKnown RBP4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 RRP7BPQ9NSQ0 103 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 TBC1D23Q9NUY8 699 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 ZNF212Q9UDV6 495 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 PCDHB2Q9Y5E7 798 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 HEMK1Q9Y5R4 338 aaPredicted RBP4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 COL15A1P39059 1388 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 MAGI3Q5TCQ9 1506 aa4.77□□□□□ -1.65
SMCHD1-208ENST00000583344 KIF7Q2M1P5 1343 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 SPATA31A1Q5TZJ5 1347 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 A0A1W2PPC1 479 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 ZNF814B7Z6K7 855 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 NDUFB8O95169 186 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 MT-ND5P03915 603 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 RPS6KB1P23443 525 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 IDUAP35475 653 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 MTA1Q13330 715 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 PRTGQ2VWP7 1150 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 MANEAQ5SRI9 462 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 SPATA3Q8NHX4 192 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 SNX22Q96L94 193 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 PSMD1Q99460 953 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 MSRB1Q9NZV6 116 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 RGS17Q9UGC6 210 aaPredicted RBP4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 CAPN11Q9UMQ6 739 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 NUDCQ9Y266 331 aa4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 EPRSP07814 1512 aaKnown RBP4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 DHX29Q7Z478 1369 aaKnown RBP4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 KTN1Q86UP2 1357 aaKnown RBP4.76□□□□□ -1.65
SMCHD1-208ENST00000583344 EIF4G3O43432 1585 aaKnown RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 ABCC5O15440 1437 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 CTIFO43310 598 aaKnown RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 EPN2O95208 641 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 SYF2O95926 243 aaKnown RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 U2AF1L5P0DN76 240 aaPredicted RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 PEX2P28328 305 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 IL6STP40189 918 aaPredicted RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 PBX1P40424 430 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 VPS41P49754 854 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 IRX6P78412 446 aaPredicted RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 U2AF1Q01081 240 aaKnown RBP eCLIP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 KIAA0753Q2KHM9 967 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 ODF3L2Q3SX64 289 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 AASDHQ4L235 1098 aaPredicted RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 ZNF585BQ52M93 769 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 HSP90AB2PQ58FF8 381 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 RBM44Q6ZP01 1051 aaKnown RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 RFX8Q6ZV50 586 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 FAM9BQ8IZU0 186 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 MAGEB6Q8N7X4 407 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 MBD3L2Q8NHZ7 208 aaPredicted RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 ZCWPW1Q9H0M4 648 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 SLC25A32Q9H2D1 315 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 MRPL44Q9H9J2 332 aaKnown RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 MOV10Q9HCE1 1003 aaKnown RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 TMEM8AQ9HCN3 771 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 ABHD10Q9NUJ1 306 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 ROCK2O75116 1388 aaKnown RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 TDRD9Q8NDG6 1382 aaKnown RBP4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 KDM6BO15054 1643 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 TEX14Q8IWB6 1497 aa4.75□□□□□ -1.65
SMCHD1-208ENST00000583344 DAPK1P53355 1430 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 UHRF1BP1Q6BDS2 1440 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 TMEM272A0A1B0GTI8 110 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 F8W8V4 182 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 TPP1O14773 563 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 TLX3O43711 291 aaPredicted RBP4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 T-ENOLP0DO92 83 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 DEKP35659 375 aaKnown RBP4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 SLC12A2P55011 1212 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 PPATQ06203 517 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 GAB1Q13480 694 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 ACOX1Q15067 660 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 CNGA3Q16281 694 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 B4GALNT2Q8NHY0 566 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 SUN3Q8TAQ9 357 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 IPCEF1Q8WWN9 437 aaPredicted RBP4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 MSLNLQ96KJ4 702 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 FAM227BQ96M60 508 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 CTAGE1Q96RT6 745 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 GATA5Q9BWX5 397 aaPredicted RBP4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 ASNSD1Q9NWL6 643 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 INSRP06213 1382 aa4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 LRPPRCP42704 1394 aaKnown RBP4.74□□□□□ -1.65
SMCHD1-208ENST00000583344 DNMT1P26358 1616 aaKnown RBP4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 TARBP1Q13395 1621 aaKnown RBP4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 LACTBL1A8MY62 500 aa4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 F8W810 466 aa4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 GOLIM4O00461 696 aa4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 PRYO14603 147 aa4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 MGEA5O60502 916 aa4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 UGDHO60701 494 aa4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 PARNO95453 639 aaKnown RBP4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 S100BP04271 92 aaPredicted RBP4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 GRM3Q14832 879 aa4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 PPP2R5AQ15172 486 aa4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 RRAGBQ5VZM2 374 aa4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 NUGGCQ68CJ6 796 aa4.73□□□□□ -1.65
SMCHD1-208ENST00000583344 PPP4R4Q6NUP7 873 aa4.73□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms