RNA–Protein interactions for RNA: ENST00000581708.5

CDK5RAP3-222, Transcript of CDK5 regulatory subunit associated protein 3, human

TSL 4

Gene CDK5RAP3, Length 543 nt, Biotype processed transcript.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CDK5RAP3-222	ENST00000581708	CAPN9	O14815	690 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	TRIM24	O15164	1050 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	PAPSS1	O43252	624 aa	Predicted RBP	13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	ACSL4	O60488	711 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	FYN	P06241	537 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	SLC2A3	P11169	496 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	HOXD9	P28356	352 aa	Predicted RBP	13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	HOXC13	P31276	330 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	KLHDC7A	Q5VTJ3	777 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	CDKAL1	Q5VV42	579 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	EGFLAM	Q63HQ2	1017 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	PMS2CL	Q68D20	193 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	DPY19L2P1	Q6NXN4	242 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	SLC36A4	Q6YBV0	504 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	TOGARAM2	Q6ZUX3	1019 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	METTL3	Q86U44	580 aa	Known RBP	13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	ZDHHC17	Q8IUH5	632 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	DDX51	Q8N8A6	666 aa	Known RBP eCLIP	13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	GPT2	Q8TD30	523 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	DQX1	Q8TE96	717 aa	Known RBP	13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	SLC39A13	Q96H72	371 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	RTKN	Q9BST9	563 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	CD248	Q9HCU0	757 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	SAMSN1	Q9NSI8	373 aa	Known RBP	13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	ELOVL2	Q9NXB9	296 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	PLK2	Q9NYY3	685 aa		13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	THAP10	Q9P2Z0	257 aa	Predicted RBP	13.1	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	TCRBV21S2A2	A0A5A6	115 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	BCLAF3	A2AJT9	711 aa	Known RBP	13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	FOXN3	O00409	490 aa	Predicted RBP	13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	HSF2BP	O75031	334 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	CALCA	P01258	141 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	GBP1	P32455	592 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	HOXD12	P35452	270 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	CLCN1	P35523	988 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	MPL	P40238	635 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	LIMK1	P53667	647 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	STARD3	Q14849	445 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	GEN1	Q17RS7	908 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	RSPO4	Q2I0M5	234 aa	Predicted RBP	13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	MAP7D1	Q3KQU3	841 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	PIK3R6	Q5UE93	754 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	LPCAT2	Q7L5N7	544 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	KIAA0907	Q7Z7F0	614 aa	Predicted RBP	13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	C1orf131	Q8NDD1	294 aa	Known RBP	13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	ANKRD20A12P	Q8NF67	263 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	IPO4	Q8TEX9	1081 aa	Known RBP	13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	CLEC4C	Q8WTT0	213 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	HMGB4	Q8WW32	186 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	DDX1	Q92499	740 aa	Known RBP	13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	BHMT	Q93088	406 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	PPP1R13B	Q96KQ4	1090 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	STK33	Q9BYT3	514 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	TPSD1	Q9BZJ3	242 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	ARRDC1-AS1	Q9H2J1	176 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	SLTM	Q9NWH9	1034 aa	Known RBP eCLIP	13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	CYTH4	Q9UIA0	394 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	STON1	Q9Y6Q2	735 aa		13.09	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	DCHS1	Q96JQ0	3298 aa		13.08	□□□□□ -0.31
CDK5RAP3-222	ENST00000581708	ANTXRL	A6NF34	631 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	PIK3R2	O00459	728 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	PES1	O00541	588 aa	Known RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	SLC30A4	O14863	429 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	AP5Z1	O43299	807 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	MSI1	O43347	362 aa	Known RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	IGLV3-25	P01717	112 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	APOE	P02649	317 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	C7	P10643	843 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	UCHL3	P15374	230 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	GABRG2	P18507	467 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	CDH5	P33151	784 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	SCNN1A	P37088	669 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	CDK17	Q00537	523 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	MYL5	Q02045	173 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	KCNMA1	Q12791	1236 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	EIF4EBP2	Q13542	120 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	DRAP1	Q14919	205 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	STX1A	Q16623	288 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	FKBP15	Q5T1M5	1219 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	CCDC183	Q5T5S1	534 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	SLC26A9	Q7LBE3	791 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	CCDC117	Q8IWD4	279 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	AHI1	Q8N157	1196 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	PGBD3	Q8N328	593 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	WDTC1	Q8N5D0	677 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	C12orf50	Q8NA57	414 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	HJURP	Q8NCD3	748 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	TMEM35B	Q8NCS4	154 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	ZNF397	Q8NF99	534 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	P2RY11	Q96G91	374 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	BTN2A3P	Q96KV6	586 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	FCRL2	Q96LA5	508 aa	Predicted RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	SLC2A13	Q96QE2	648 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	NAA15	Q9BXJ9	866 aa	Known RBP	13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	FBRS	Q9HAH7	460 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	ACP6	Q9NPH0	428 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	RRN3	Q9NYV6	651 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	SLC12A6	Q9UHW9	1150 aa		13.08	□□□□□ -0.32
CDK5RAP3-222	ENST00000581708	NAALADL1	Q9UQQ1	740 aa		13.08	□□□□□ -0.32

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms