RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 COBLL1Q53SF7 1204 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 KIAA0907Q7Z7F0 614 aaPredicted RBP7.04□□□□□ -1.28
VPS53-213ENST00000572334 DENND1CQ8IV53 801 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 FMR1NBQ8N0W7 255 aaPredicted RBP7.04□□□□□ -1.28
VPS53-213ENST00000572334 MINDY1Q8N5J2 469 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 FBXL13Q8NEE6 735 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 CEP76Q8TAP6 659 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 SPATA20Q8TB22 786 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 SORCS1Q8WY21 1168 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 DNASE2BQ8WZ79 361 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 TOE1Q96GM8 510 aaKnown RBP7.04□□□□□ -1.28
VPS53-213ENST00000572334 ZSWIM1Q9BR11 485 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 ULBP1Q9BZM6 244 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 IMPG2Q9BZV3 1241 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 ITM2CQ9NQX7 267 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 STOML2Q9UJZ1 356 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 KLK13Q9UKR3 277 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 ZNF510Q9Y2H8 683 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 URB1O60287 2271 aaKnown RBP7.04□□□□□ -1.28
VPS53-213ENST00000572334 ASXL3Q9C0F0 2248 aa7.04□□□□□ -1.28
VPS53-213ENST00000572334 SLC12A8A0AV02 714 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 TRIM49BA6NDI0 452 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 YJEFN3A6XGL0 299 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 C10orf142B7Z368 130 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 E7ENQ6 273 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 RNF225M0QZC1 329 aaPredicted RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 TAF4O00268 1085 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 XPO1O14980 1071 aaKnown RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 SH3BP5O60239 455 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 CBFA2T3O75081 653 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 KIF20AO95235 890 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 ZBED1O96006 694 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 CALCAP01258 141 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 RALAP11233 206 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 NCAM1P13591 858 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 RPL13P26373 211 aaKnown RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 CD6P30203 668 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 HLA-FP30511 346 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 CHKAP35790 457 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 TPMTP51580 245 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 TKTL1P51854 596 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 SIM1P81133 766 aaPredicted RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 GFPT1Q06210 699 aaPredicted RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 GOLGA8FQ08AF8 430 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 GOLGA8DPQ0D2H9 430 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 CCDC173Q0VFZ6 552 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 GRIK2Q13002 908 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 CUL2Q13617 745 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 ZNF234Q14588 700 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 PTPRNQ16849 979 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 GOLGA7BQ2TAP0 167 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 ANKRD40Q6AI12 368 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 SDE2Q6IQ49 451 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 KIAA1324Q6UXG2 1013 aaKnown RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 NUDT18Q6ZVK8 323 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 ANKS1BQ7Z6G8 1248 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 RAB44Q7Z6P3 723 aaPredicted RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 TMPRSS6Q8IU80 811 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 FMNL3Q8IVF7 1028 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 ENGASEQ8NFI3 743 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 LMO3Q8TAP4 145 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 WFDC5Q8TCV5 224 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 TFAP2BQ92481 460 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 ERCC4Q92889 916 aaPredicted RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 SLC35C1Q96A29 364 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 MYEOVQ96EZ4 313 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 LMLNQ96KR4 655 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 CDK5RAP1Q96SZ6 601 aaKnown RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 GTPBP2Q9BX10 602 aaKnown RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 DCLK3Q9C098 648 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 TMEM245Q9H330 911 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 FAM124BQ9H5Z6 455 aaPredicted RBP7.03□□□□□ -1.28
VPS53-213ENST00000572334 PRDM16Q9HAZ2 1276 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 IL21RQ9HBE5 538 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 ELOVL2Q9NXB9 296 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 MARCH2Q9P0N8 246 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 SFMBT1Q9UHJ3 866 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 TSPAN16Q9UKR8 245 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 MSRB2Q9Y3D2 182 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 NEUROG3Q9Y4Z2 214 aa7.03□□□□□ -1.28
VPS53-213ENST00000572334 DOCK4Q8N1I0 1966 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 TDRD6O60522 2096 aaKnown RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 SRRM3A6NNA2 597 aaPredicted RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 METTL12A8MUP2 240 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 GOLGA6L22H0YM25 854 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 O00370 1275 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 NPC1O15118 1278 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 CETN3O15182 167 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 MSI1O43347 362 aaKnown RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 TSPAN3O60637 253 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 OPHN1O60890 802 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 IGLV3-27P01718 113 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 FYNP06241 537 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 HLA-EP13747 358 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 HOXB3P14651 431 aaPredicted RBP7.02□□□□□ -1.29
VPS53-213ENST00000572334 SLC6A4P31645 630 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 ZNF132P52740 706 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 DAOAP59103 153 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 ADIGQ0VDE8 80 aa7.02□□□□□ -1.29
VPS53-213ENST00000572334 CAMK2GQ13555 558 aaPredicted RBP7.02□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms