RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 SUV39H1O43463 412 aa19■□□□□ 0.63
CLK3-227ENST00000570296 PGFP49763 221 aa19■□□□□ 0.63
CLK3-227ENST00000570296 KLHDC10Q6PID8 442 aa19■□□□□ 0.63
CLK3-227ENST00000570296 CCDC81Q6ZN84 652 aa19■□□□□ 0.63
CLK3-227ENST00000570296 OR5B17Q8NGF7 314 aa19■□□□□ 0.63
CLK3-227ENST00000570296 GOLGA1Q92805 767 aa19■□□□□ 0.63
CLK3-227ENST00000570296 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP19■□□□□ 0.63
CLK3-227ENST00000570296 STRA6Q9BX79 667 aa19■□□□□ 0.63
CLK3-227ENST00000570296 TMEM245Q9H330 911 aa19■□□□□ 0.63
CLK3-227ENST00000570296 FBXO44Q9H4M3 255 aa19■□□□□ 0.63
CLK3-227ENST00000570296 AASDHPPTQ9NRN7 309 aa19■□□□□ 0.63
CLK3-227ENST00000570296 SEPT3Q9UH03 358 aa19■□□□□ 0.63
CLK3-227ENST00000570296 UTP20O75691 2785 aaKnown RBP19■□□□□ 0.63
CLK3-227ENST00000570296 A0A1W2PR77 199 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 USP12O75317 370 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 CHKAP35790 457 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 PLA2G4AP47712 749 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 SKOR1P84550 965 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 BNIP3Q12983 259 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 DUOXA2Q1HG44 320 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 FAM35AQ86V20 835 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 SMARCD1Q96GM5 515 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 SLC2A11Q9BYW1 496 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 BLOC1S4Q9NUP1 217 aa18.99■□□□□ 0.63
CLK3-227ENST00000570296 GOLGA8IPA6NC78 632 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 VWA3AA6NCI4 1184 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 GOLGA8JA6NMD2 632 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 A8MXQ7 604 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 NXPH1P58417 271 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 MCM6Q14566 821 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 FNDC3BQ53EP0 1204 aaKnown RBP18.98■□□□□ 0.63
CLK3-227ENST00000570296 TMEM215Q68D42 235 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 USP30Q70CQ3 517 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 CALML4Q96GE6 196 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 ACCSQ96QU6 501 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 NCKAP1Q9Y2A7 1128 aa18.98■□□□□ 0.63
CLK3-227ENST00000570296 STC2O76061 302 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 CYBBP04839 570 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 DDIT3P35638 169 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 ANAPC15P60006 121 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 PDE4CQ08493 712 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 KCNA1Q09470 495 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 ZNF211Q13398 564 aaPredicted RBP18.97■□□□□ 0.63
CLK3-227ENST00000570296 SLC45A4Q5BKX6 768 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 L1TD1Q5T7N2 865 aaKnown RBP18.97■□□□□ 0.63
CLK3-227ENST00000570296 PAQR9Q6ZVX9 377 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 DYMQ7RTS9 669 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 RAD54LQ92698 747 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 MED10Q9BTT4 135 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 EBF2Q9HAK2 575 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 SCML1Q9UN30 329 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 DOPEY1Q5JWR5 2465 aa18.97■□□□□ 0.63
CLK3-227ENST00000570296 TLR4O00206 839 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 PRPF6O94906 941 aaKnown RBP18.96■□□□□ 0.63
CLK3-227ENST00000570296 CR2P20023 1033 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 TNNC1P63316 161 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 NFKB2Q00653 900 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 SURF1Q15526 300 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 ARL13BQ3SXY8 428 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 SGO2Q562F6 1265 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 ZNF776Q68DI1 518 aaPredicted RBP18.96■□□□□ 0.63
CLK3-227ENST00000570296 SFR1Q86XK3 245 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 AK8Q96MA6 479 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 CBWD1Q9BRT8 395 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 PRSS16Q9NQE7 514 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 OSER1Q9NX31 292 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 TPX2Q9ULW0 747 aaKnown RBP18.96■□□□□ 0.63
CLK3-227ENST00000570296 PLA2G4CQ9UP65 541 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 ABCA12Q86UK0 2595 aa18.96■□□□□ 0.63
CLK3-227ENST00000570296 FAM47DPA6NHR8 397 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 LRRC72A6NJI9 287 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 ENO4A6NNW6 628 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 SIGLEC6O43699 453 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 OPA1O60313 960 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 CSO75390 466 aaKnown RBP18.95■□□□□ 0.62
CLK3-227ENST00000570296 AP1G2O75843 785 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 KLKB1P03952 638 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 SFTPCP11686 197 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 MYF5P13349 255 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 RBMS1P29558 406 aaKnown RBP18.95■□□□□ 0.62
CLK3-227ENST00000570296 GALCP54803 685 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 DAB2P98082 770 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 SFSWAPQ12872 951 aaKnown RBP18.95■□□□□ 0.62
CLK3-227ENST00000570296 LINC00303Q3SY05 128 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 C4orf17Q53FE4 359 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 ARL6IP4Q66PJ3 421 aaKnown RBP18.95■□□□□ 0.62
CLK3-227ENST00000570296 NCEH1Q6PIU2 408 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 NOC3LQ8WTT2 800 aaKnown RBP18.95■□□□□ 0.62
CLK3-227ENST00000570296 DCLK3Q9C098 648 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 PABPC3Q9H361 631 aaKnown RBP18.95■□□□□ 0.62
CLK3-227ENST00000570296 MRPL44Q9H9J2 332 aaKnown RBP18.95■□□□□ 0.62
CLK3-227ENST00000570296 KRT82Q9NSB4 513 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 SEL1LQ9UBV2 794 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 CLEC4EQ9ULY5 219 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 SCML2Q9UQR0 700 aa18.95■□□□□ 0.62
CLK3-227ENST00000570296 C10orf142B7Z368 130 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 MDM4O15151 490 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 LZTS3O60299 673 aaPredicted RBP18.94■□□□□ 0.62
CLK3-227ENST00000570296 CCR5P51681 352 aa18.94■□□□□ 0.62
CLK3-227ENST00000570296 WDR72Q3MJ13 1102 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms