RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 PMS2P54278 862 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 SLC12A2P55011 1212 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 DSTNP60981 165 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 GUCY1B3Q02153 619 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 ITKQ08881 620 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 IFIT5Q13325 482 aaKnown RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 MTM1Q13496 603 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 MTMR1Q13613 665 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 USH1GQ495M9 461 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 ARHGAP29Q52LW3 1261 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 CEP78Q5JTW2 689 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 KLC3Q6P597 504 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 MFSD6Q6ZSS7 791 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 VSIG1Q86XK7 387 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 VRK3Q8IV63 474 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 COLGALT2Q8IYK4 626 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 CCDC170Q8IYT3 715 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 PPM1NQ8N819 430 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 CPEB3Q8NE35 698 aaKnown RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 OR6C4Q8NGE1 309 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 OR56A1Q8NGH5 318 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 KIF18AQ8NI77 898 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 SHC3Q92529 594 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 JADE3Q92613 823 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 FUBP3Q96I24 572 aaKnown RBP eCLIP5.41□□□□□ -1.54
VPS35-205ENST00000563984 PHACTR3Q96KR7 559 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 NEU1Q99519 415 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 BARD1Q99728 777 aaKnown RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 GAL3ST1Q99999 423 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 PI4K2AQ9BTU6 479 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 TEX101Q9BY14 249 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 RTFDC1Q9BY42 306 aaPredicted RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 ASPSCR1Q9BZE9 553 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 FAM107BQ9H098 131 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 GLT8D2Q9H1C3 349 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 PSTPIP2Q9H939 334 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 DDX18Q9NVP1 670 aaKnown RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 TUBGCP4Q9UGJ1 667 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 PACSIN3Q9UKS6 424 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 TRHDEQ9UKU6 1024 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 ACTL7AQ9Y615 435 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 GMEB1Q9Y692 573 aa5.41□□□□□ -1.54
VPS35-205ENST00000563984 IBTKQ9P2D0 1353 aaPredicted RBP5.41□□□□□ -1.54
VPS35-205ENST00000563984 A0A1B0GVC2 190 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 MARCH11A6NNE9 402 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 NVLO15381 856 aaKnown RBP5.4□□□□□ -1.54
VPS35-205ENST00000563984 NDUFS2O75306 463 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 KATNA1O75449 491 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 NPPAP01160 153 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 CD4P01730 458 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 AMY1AP04745 511 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 CFIP05156 583 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 PDHA1P08559 390 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 ALAS1P13196 640 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 ZKSCAN1P17029 563 aaPredicted RBP5.4□□□□□ -1.54
VPS35-205ENST00000563984 TMEM11P17152 192 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 GCSHP23434 173 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 DDX6P26196 483 aaKnown RBP eCLIP5.4□□□□□ -1.54
VPS35-205ENST00000563984 PCSK1P29120 753 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 PRKAR2BP31323 418 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 SOX6P35712 828 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 HADHAP40939 763 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 STAT1P42224 750 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 HAAOP46952 286 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 SLC16A1P53985 500 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 PHEXP78562 749 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 MPP1Q00013 466 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 GBE1Q04446 702 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 NCBP1Q09161 790 aaKnown RBP5.4□□□□□ -1.54
VPS35-205ENST00000563984 CETN1Q12798 172 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 BTG3Q14201 252 aaPredicted RBP5.4□□□□□ -1.54
VPS35-205ENST00000563984 SAFBQ15424 915 aaKnown RBP eCLIP5.4□□□□□ -1.54
VPS35-205ENST00000563984 SPDYE7PQ495Y7 208 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 CFAP221Q4G0U5 840 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 AADACL4Q5VUY2 407 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 ZNF529Q6P280 563 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 LDHAL6AQ6ZMR3 332 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 MIGA2Q7L4E1 593 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 BNIPLQ7Z465 357 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 KDELC2Q7Z4H8 507 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 MAPKAPK5Q8IW41 473 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 WDR63Q8IWG1 891 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 NRSN1Q8IZ57 195 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 ZNF619Q8N2I2 560 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 SPATA5Q8NB90 893 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 CCT6BQ92526 530 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 DPF2Q92785 391 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 HOOK2Q96ED9 719 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 SNF8Q96H20 258 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 RADILQ96JH8 1075 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 SPATA17Q96L03 361 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 JAKMIP1Q96N16 626 aaKnown RBP5.4□□□□□ -1.54
VPS35-205ENST00000563984 MPHOSPH8Q99549 860 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 SMAD5Q99717 465 aaKnown RBP5.4□□□□□ -1.54
VPS35-205ENST00000563984 DESI2Q9BSY9 194 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 EIF2AQ9BY44 585 aaKnown RBP5.4□□□□□ -1.54
VPS35-205ENST00000563984 AGXT2Q9BYV1 514 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 EHD1Q9H4M9 534 aa5.4□□□□□ -1.54
VPS35-205ENST00000563984 BICC1Q9H694 974 aaKnown RBP5.4□□□□□ -1.54
VPS35-205ENST00000563984 CLK4Q9HAZ1 481 aaKnown RBP5.4□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms