RNA–Protein interactions for RNA: ENST00000563692.1

VPS39-207, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 4

Gene VPS39, Length 587 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-207ENST00000563692 CTXN3Q4LDR2 81 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 DCAF6Q58WW2 860 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 RTP2Q5QGT7 225 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 VARS2Q5ST30 1063 aaKnown RBP9.28□□□□□ -0.92
VPS39-207ENST00000563692 SH3PXD2AQ5TCZ1 1133 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 TXNRD3NBQ6F5E7 133 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 PM20D1Q6GTS8 502 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 ZNF280DQ6N043 979 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 PRSS55Q6UWB4 352 aaPredicted RBP9.28□□□□□ -0.92
VPS39-207ENST00000563692 VSTM1Q6UX27 236 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 CEP128Q6ZU80 1094 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 HFE2Q6ZVN8 426 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 BBS12Q6ZW61 710 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 ANKS3Q6ZW76 656 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 BEND5Q7L4P6 421 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 KRT222Q8N1A0 295 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 GOLGA6L1Q8N7Z2 621 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 KREMEN2Q8NCW0 462 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 CLEC4CQ8WTT0 213 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 PIWIL1Q96J94 861 aaKnown RBP9.28□□□□□ -0.92
VPS39-207ENST00000563692 SLC2A13Q96QE2 648 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 KCNK16Q96T55 309 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 RHOBTB2Q9BYZ6 727 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 ULBP1Q9BZM6 244 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 TRIM31Q9BZY9 425 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 DPH5Q9H2P9 285 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 STAU2Q9NUL3 570 aaKnown RBP eCLIP9.28□□□□□ -0.92
VPS39-207ENST00000563692 WHRNQ9P202 907 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 SORCS3Q9UPU3 1222 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 SNX24Q9Y343 169 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 PCDHB5Q9Y5E4 795 aa9.28□□□□□ -0.92
VPS39-207ENST00000563692 ZSCAN5CA6NGD5 496 aaPredicted RBP9.27□□□□□ -0.93
VPS39-207ENST00000563692 APOC4-APOC2K7ER74 178 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 M0QYT0 321 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 TRIM66O15016 1216 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 OPA1O60313 960 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 XYLBO75191 536 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 RFPL2O75678 378 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 KRT14P02533 472 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 APOC2P02655 101 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 LTFP02788 710 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 ITGAVP06756 1048 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 USP17L7P0C7H9 530 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 SPATA31D3P0C874 917 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 MYBL2P10244 700 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 NCAM1P13591 858 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 FGFR3P22607 806 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 STIP1P31948 543 aaKnown RBP9.27□□□□□ -0.93
VPS39-207ENST00000563692 GBP2P32456 591 aaPredicted RBP9.27□□□□□ -0.93
VPS39-207ENST00000563692 PLTPP55058 493 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 HDAC4P56524 1084 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 DEUP1Q05D60 604 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 PTK6Q13882 451 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 MRPL58Q14197 206 aaKnown RBP9.27□□□□□ -0.93
VPS39-207ENST00000563692 SLC39A12Q504Y0 691 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 PPM1LQ5SGD2 360 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 CFAP58Q5T655 872 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 TRNP1Q6NT89 227 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 SPATA31D4Q6ZUB0 917 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 BZW1Q7L1Q6 419 aaKnown RBP9.27□□□□□ -0.93
VPS39-207ENST00000563692 BMP8AQ7Z5Y6 402 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 LRRTM3Q86VH5 581 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 DDX42Q86XP3 938 aaKnown RBP eCLIP9.27□□□□□ -0.93
VPS39-207ENST00000563692 MREGQ8N565 214 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 ZMIZ2Q8NF64 920 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 OR10T2Q8NGX3 314 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 C2orf15Q8WU43 125 aaKnown RBP9.27□□□□□ -0.93
VPS39-207ENST00000563692 P3H4Q92791 437 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 NKD2Q969F2 451 aaPredicted RBP9.27□□□□□ -0.93
VPS39-207ENST00000563692 NT5C3BQ969T7 300 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 HAUS1Q96CS2 278 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 C8orf48Q96LL4 319 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 RNF157Q96PX1 679 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 RUFY1Q96T51 708 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 NPY6RQ99463 290 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 FMO2Q99518 471 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 PKMYT1Q99640 499 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 ZNF670Q9BS34 389 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 TRIM51Q9BSJ1 452 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 KCNH6Q9H252 994 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 WDR6Q9NNW5 1121 aaKnown RBP9.27□□□□□ -0.93
VPS39-207ENST00000563692 FAM53CQ9NYF3 392 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 LIMD1Q9UGP4 676 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 ASIC3Q9UHC3 531 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 R3HDM2Q9Y2K5 976 aaKnown RBP9.27□□□□□ -0.93
VPS39-207ENST00000563692 CLUHO75153 1309 aa9.27□□□□□ -0.93
VPS39-207ENST00000563692 GOLGA6BA6NDN3 693 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 HHLA1C9JL84 531 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 APOL1O14791 398 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 MCF2LO15068 1137 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 SASH3O75995 380 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 ASGR2P07307 311 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 C8AP07357 584 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 HNRNPA1P09651 372 aaKnown RBP eCLIP9.26□□□□□ -0.93
VPS39-207ENST00000563692 ATF2P15336 505 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 TGM2P21980 687 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 ELF1P32519 619 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 PLA2G5P39877 138 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 ARL4AP40617 200 aa9.26□□□□□ -0.93
VPS39-207ENST00000563692 MAGEA11P43364 429 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms