RNA–Protein interactions for RNA: ENST00000562668.1

SMG1-206, Transcript of SMG1, nonsense mediated mRNA decay associated PI3K related kinase, humanhuman

TSL 3

Gene SMG1, Length 449 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG1-206ENST00000562668 FAM136AQ96C01 138 aa5.35□□□□□ -1.55
SMG1-206ENST00000562668 ZNF778Q96MU6 729 aa5.35□□□□□ -1.55
SMG1-206ENST00000562668 AMBRA1Q9C0C7 1298 aa5.35□□□□□ -1.55
SMG1-206ENST00000562668 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.35□□□□□ -1.556e-7■■■□□ 15.2
SMG1-206ENST00000562668 WDR26Q9H7D7 661 aa5.35□□□□□ -1.55
SMG1-206ENST00000562668 HELLSQ9NRZ9 838 aa5.35□□□□□ -1.55
SMG1-206ENST00000562668 FLRT1Q9NZU1 646 aa5.35□□□□□ -1.55
SMG1-206ENST00000562668 SERGEFQ9UGK8 458 aa5.35□□□□□ -1.55
SMG1-206ENST00000562668 AGAP1Q9UPQ3 857 aa5.35□□□□□ -1.55
SMG1-206ENST00000562668 MYH8P13535 1937 aa5.35□□□□□ -1.55
SMG1-206ENST00000562668 ROBO3Q96MS0 1386 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 TNKSO95271 1327 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 SLC16A6O15403 523 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 KIF20AO95235 890 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 CYP2D6P10635 497 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 FKBP1BP68106 108 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 AMPD3Q01432 767 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 BMPR2Q13873 1038 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 MCMDC2Q4G0Z9 681 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 SBK1Q52WX2 424 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 ZNF551Q7Z340 670 aaPredicted RBP5.34□□□□□ -1.55
SMG1-206ENST00000562668 CERS3Q8IU89 383 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 SEMA6DQ8NFY4 1073 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 ATRIPQ8WXE1 791 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 RILPL2Q969X0 211 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 GBA2Q9HCG7 927 aaPredicted RBP5.34□□□□□ -1.55
SMG1-206ENST00000562668 DKK3Q9UBP4 350 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 ZDHHC8Q9ULC8 765 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 PCDHA3Q9Y5H8 950 aa5.34□□□□□ -1.55
SMG1-206ENST00000562668 LOC285556D6RIA3 1793 aa5.34□□□□□ -1.56
SMG1-206ENST00000562668 ZMYM6O95789 1325 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 CCDC171Q6TFL3 1326 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 CYP2D7A0A087X1C5 515 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 WDR91A4D1P6 747 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 UBE2Q2LH0YL09 131 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 M0QYG6 137 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 VPS4BO75351 444 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 HNRNPCP07910 306 aaKnown RBP eCLIP5.33□□□□□ -1.56
SMG1-206ENST00000562668 HSPD1P10809 573 aaKnown RBP5.33□□□□□ -1.56
SMG1-206ENST00000562668 SHMT1P34896 483 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 TOB1P50616 345 aaPredicted RBP5.33□□□□□ -1.56
SMG1-206ENST00000562668 ALX1Q15699 326 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 TBCCQ15814 346 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 SRSF7Q16629 238 aaKnown RBP eCLIP5.33□□□□□ -1.56
SMG1-206ENST00000562668 SHROOM1Q2M3G4 852 aaPredicted RBP5.33□□□□□ -1.56
SMG1-206ENST00000562668 SUPT20HL1Q3ZLR7 823 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 C12orf60Q5U649 245 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 TATDN1Q6P1N9 297 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 CTR9Q6PD62 1173 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 HEATR3Q7Z4Q2 680 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 CLMNQ96JQ2 1002 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 SMAD5Q99717 465 aaKnown RBP5.33□□□□□ -1.56
SMG1-206ENST00000562668 CRNKL1Q9BZJ0 848 aaKnown RBP5.33□□□□□ -1.56
SMG1-206ENST00000562668 DHX36Q9H2U1 1008 aaKnown RBP5.33□□□□□ -1.56
SMG1-206ENST00000562668 ATP8A2Q9NTI2 1148 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 TMOD2Q9NZR1 351 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 RAD54BQ9Y620 910 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 SLC4A4Q9Y6R1 1079 aa5.33□□□□□ -1.56
SMG1-206ENST00000562668 RAD50Q92878 1312 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 TARM1B6A8C7 271 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 FGAP02671 866 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 CCND1P24385 295 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 GCLCP48506 637 aaPredicted RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 HK3P52790 923 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 HUNKP57058 714 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 TFF2Q03403 129 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 EIF2B5Q13144 721 aaKnown RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 PRKG1Q13976 671 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 VGLL4Q14135 290 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 ZNF618Q5T7W0 954 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 CWC27Q6UX04 472 aaKnown RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 ZNF782Q6ZMW2 699 aaPredicted RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 FOXP4Q8IVH2 680 aaPredicted RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 SLC44A5Q8NCS7 719 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 TNPO1Q92973 898 aaKnown RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 ZKSCAN4Q969J2 545 aaPredicted RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 DYNLL2Q96FJ2 89 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 LSG1Q9H089 658 aaKnown RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 MRPL46Q9H2W6 279 aaKnown RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 SERHLQ9NQF3 203 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 ARHGEF3Q9NR81 526 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 ST6GALNAC1Q9NSC7 600 aaPredicted RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 SERTAD4Q9NUC0 356 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 FRMD4AQ9P2Q2 1039 aaPredicted RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 PI4KBQ9UBF8 816 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 HERC5Q9UII4 1024 aaKnown RBP5.32□□□□□ -1.56
SMG1-206ENST00000562668 ANAPC4Q9UJX5 808 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 DDX52Q9Y2R4 599 aaKnown RBP eCLIP5.32□□□□□ -1.56
SMG1-206ENST00000562668 PARP14Q460N5 1801 aa5.32□□□□□ -1.56
SMG1-206ENST00000562668 RLFQ13129 1914 aa5.31□□□□□ -1.56
SMG1-206ENST00000562668 IGKV6D-41A0A0C4DH26 115 aa5.31□□□□□ -1.56
SMG1-206ENST00000562668 HIP1O00291 1037 aa5.31□□□□□ -1.56
SMG1-206ENST00000562668 FTLP02792 175 aaPredicted RBP5.31□□□□□ -1.56
SMG1-206ENST00000562668 NDUFB7P17568 137 aa5.31□□□□□ -1.56
SMG1-206ENST00000562668 RECQLP46063 649 aaPredicted RBP5.31□□□□□ -1.56
SMG1-206ENST00000562668 GRM1Q13255 1194 aa5.31□□□□□ -1.56
SMG1-206ENST00000562668 SLC4A8Q2Y0W8 1093 aa5.31□□□□□ -1.56
SMG1-206ENST00000562668 DEFB115Q30KQ5 88 aa5.31□□□□□ -1.56
SMG1-206ENST00000562668 TMEM119Q4V9L6 283 aa5.31□□□□□ -1.56
SMG1-206ENST00000562668 RGMBQ6NW40 437 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms