RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 COQ4Q9Y3A0 265 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 NR2E3Q9Y5X4 410 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 IVNS1ABPQ9Y6Y0 642 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 IGKV6D-21A0A0A0MT36 114 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 H3BNX3 289 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 BANF1O75531 89 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 CYP2C9P11712 490 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 S100A1P23297 94 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 MFAP3P55082 362 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 TCHHL1Q5QJ38 904 aaPredicted RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 C6orf52Q5T4I8 152 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 LMBRD2Q68DH5 695 aaPredicted RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 SV2AQ7L0J3 742 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 USP37Q86T82 979 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 SLC47A2Q86VL8 602 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 FAM71AQ8IYT1 594 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 ACTRT2Q8TDY3 377 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 SHC3Q92529 594 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 TRIM11Q96F44 468 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 NT5C1BQ96P26 610 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 CGREF1Q99674 301 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 PI4K2AQ9BTU6 479 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 RAB20Q9NX57 234 aa13.72□□□□□ -0.21
CLK3-206ENST00000562078 NOCTQ9UK39 431 aaKnown RBP13.72□□□□□ -0.21
CLK3-206ENST00000562078 TMX2-CTNND1H3BSU7 103 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 PEX1O43933 1283 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 RCVRNP35243 200 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 GPC3P51654 580 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 MCCD1P59942 119 aaPredicted RBP13.71□□□□□ -0.21
CLK3-206ENST00000562078 ARPC4P59998 168 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 DMPKQ09013 629 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 GRM1Q13255 1194 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 LY6KQ17RY6 165 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 ANKS1BQ7Z6G8 1248 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 IQCF2Q8IXL9 164 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 GALNT4Q8N4A0 578 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 ALLCQ8N6M5 410 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 BANPQ8N9N5 519 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 HELQQ8TDG4 1101 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 GRK7Q8WTQ7 553 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 DHX38Q92620 1227 aaKnown RBP13.71□□□□□ -0.21
CLK3-206ENST00000562078 ITPKCQ96DU7 683 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 ZNF512Q96ME7 567 aaPredicted RBP13.71□□□□□ -0.21
CLK3-206ENST00000562078 DCUN1D5Q9BTE7 237 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 CCDC106Q9BWC9 280 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 OSBPL10Q9BXB5 764 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 HEMGNQ9BXL5 484 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 Q9H521 79 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 MORF4L1Q9UBU8 362 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 MARCOQ9UEW3 520 aaPredicted RBP13.71□□□□□ -0.21
CLK3-206ENST00000562078 SOX13Q9UN79 622 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 GOLGA8TH3BQL2 631 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 FAM58BPP0C7Q3 252 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 KITP10721 976 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 CDH3P22223 829 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 TCF7P36402 384 aaPredicted RBP13.71□□□□□ -0.21
CLK3-206ENST00000562078 NLRP11P59045 1033 aaKnown RBP13.71□□□□□ -0.21
CLK3-206ENST00000562078 OASLQ15646 514 aaKnown RBP13.71□□□□□ -0.21
CLK3-206ENST00000562078 ZNF564Q8TBZ8 553 aaPredicted RBP13.71□□□□□ -0.21
CLK3-206ENST00000562078 FAM111AQ96PZ2 611 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 PCDHB18PQ96TA0 734 aa13.71□□□□□ -0.21
CLK3-206ENST00000562078 ANK1P16157 1881 aa13.71□□□□□ -0.22
CLK3-206ENST00000562078 DNAJC25-GNG10A0A024R161 153 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 XPO1O14980 1071 aaKnown RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 EXTL3O43909 919 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 PPARGP37231 505 aaPredicted RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 NAMPTP43490 491 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 ACOT2P49753 483 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 WNT7BP56706 349 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 TAF1CQ15572 869 aaPredicted RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 USP41Q3LFD5 358 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 PPP1R2P3Q6NXS1 205 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 ZBTB45Q96K62 511 aaPredicted RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 NSMCE3Q96MG7 304 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 RANBP9Q96S59 729 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 NIFKQ9BYG3 293 aaKnown RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 ZNF395Q9H8N7 513 aaPredicted RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 TLL2Q9Y6L7 1015 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 K7ERI5 159 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 TM9SF1O15321 606 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 DGKIO75912 1065 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 ARIH2O95376 493 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 ZBTB11O95625 1053 aaPredicted RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 EDN1P05305 212 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 SLC10A3P09131 477 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 ADORA2AP29274 412 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 PHBP35232 272 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 ARL2P36404 184 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 STAT5BP51692 787 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 FAM110CQ1W6H9 321 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 NANOGP8Q6NSW7 305 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 METTL7BQ6UX53 244 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 ARID3BQ8IVW6 561 aaPredicted RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 RAVER1Q8IY67 606 aaKnown RBP13.7□□□□□ -0.22
CLK3-206ENST00000562078 GLIS1Q8NBF1 620 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 TTC13Q8NBP0 860 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 GSDMBQ8TAX9 411 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 GRIN3AQ8TCU5 1115 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 HSPH1Q92598 858 aa13.7□□□□□ -0.22
CLK3-206ENST00000562078 HAPLN2Q9GZV7 340 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 62.9 ms