RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TEAD4Q15561 434 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 TRIP4Q15650 581 aaPredicted RBP9.59□□□□□ -0.87
HDDC3-204ENST00000559834 EDRF1Q3B7T1 1238 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 RAB41Q5JT25 222 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 CCNI2Q6ZMN8 369 aaPredicted RBP9.59□□□□□ -0.87
HDDC3-204ENST00000559834 PROSER1Q86XN7 944 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 FAM217AQ8IXS0 508 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 ZCCHC9Q8N567 271 aaKnown RBP9.59□□□□□ -0.87
HDDC3-204ENST00000559834 SLC4A11Q8NBS3 891 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 OR2T3Q8NH03 318 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 WFIKKN2Q8TEU8 576 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 IPO9Q96P70 1041 aaKnown RBP9.59□□□□□ -0.87
HDDC3-204ENST00000559834 CDC6Q99741 560 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 FBRSQ9HAH7 460 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 TM7SF3Q9NS93 570 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 HESX1Q9UBX0 185 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 EIF2B4Q9UI10 523 aaKnown RBP9.59□□□□□ -0.87
HDDC3-204ENST00000559834 HBS1LQ9Y450 684 aaKnown RBP9.59□□□□□ -0.87
HDDC3-204ENST00000559834 PCDHGB2Q9Y5G2 931 aa9.59□□□□□ -0.87
HDDC3-204ENST00000559834 ADAMTS9Q9P2N4 1935 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 XPO1O14980 1071 aaKnown RBP9.58□□□□□ -0.88
HDDC3-204ENST00000559834 FLRT2O43155 660 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 CBFA2T3O75081 653 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 LATS1O95835 1130 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 ATP5BP06576 529 aaKnown RBP9.58□□□□□ -0.88
HDDC3-204ENST00000559834 MXI1P50539 228 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 AFF3P51826 1226 aaKnown RBP9.58□□□□□ -0.88
HDDC3-204ENST00000559834 COPAP53621 1224 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 ZBTB16Q05516 673 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 DPYDQ12882 1025 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 CAMK2GQ13555 558 aaPredicted RBP9.58□□□□□ -0.88
HDDC3-204ENST00000559834 COL9A2Q14055 689 aaPredicted RBP9.58□□□□□ -0.88
HDDC3-204ENST00000559834 HLA-BQ31612 363 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 FNDC3BQ53EP0 1204 aaKnown RBP9.58□□□□□ -0.88
HDDC3-204ENST00000559834 SGO2Q562F6 1265 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 ADGRF1Q5T601 910 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 DBX2Q6ZNG2 339 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 PNPLA1Q8N8W4 532 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 ZNF557Q8N988 423 aaPredicted RBP9.58□□□□□ -0.88
HDDC3-204ENST00000559834 RBBP8NLQ8NC74 664 aaPredicted RBP9.58□□□□□ -0.88
HDDC3-204ENST00000559834 ENGASEQ8NFI3 743 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 RHBDD1Q8TEB9 315 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 SORCS1Q8WY21 1168 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 SEMA4DQ92854 862 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 P2RY11Q96G91 374 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 ARID3AQ99856 593 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 IRX2Q9BZI1 471 aaPredicted RBP9.58□□□□□ -0.88
HDDC3-204ENST00000559834 ULBP1Q9BZM6 244 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 LHX5Q9H2C1 402 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 CCDC86Q9H6F5 360 aaKnown RBP9.58□□□□□ -0.88
HDDC3-204ENST00000559834 ABCC13Q9NSE7 274 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 SUN2Q9UH99 717 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 PCOLCE2Q9UKZ9 415 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 KIAA1257Q9ULG3 409 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 CLEC4EQ9ULY5 219 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 ATP6V1DQ9Y5K8 247 aa9.58□□□□□ -0.88
HDDC3-204ENST00000559834 PCDH15Q96QU1 1955 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 FAM237AA0A1B0GTK4 181 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 TAF4O00268 1085 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 DFNA5O60443 496 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 TSPAN3O60637 253 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 DNTTP04053 509 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 PRR29P0C7W0 189 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 VDRP11473 427 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 CD19P15391 556 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 PRKCHP24723 683 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 CSNK1EP49674 416 aaKnown RBP9.57□□□□□ -0.88
HDDC3-204ENST00000559834 NDUFA8P51970 172 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 BCAT1P54687 386 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 BST2Q10589 180 aaKnown RBP9.57□□□□□ -0.88
HDDC3-204ENST00000559834 SFSWAPQ12872 951 aaKnown RBP9.57□□□□□ -0.88
HDDC3-204ENST00000559834 PKP1Q13835 747 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 MPP7Q5T2T1 576 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 TCERG1LQ5VWI1 586 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 BSPRYQ5W0U4 402 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 TMEM215Q68D42 235 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 KRBA2Q6ZNG9 492 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 CHST9Q7L1S5 443 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 SLCO6A1Q86UG4 719 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 FAM124AQ86V42 546 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 FMNL3Q8IVF7 1028 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 UNC45BQ8IWX7 931 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 AHI1Q8N157 1196 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 SIX6OS1Q8N1H7 587 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 SNX19Q92543 992 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 GOLGA1Q92805 767 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 TATDN2Q93075 761 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 SCAND2PQ9GZW5 306 aaPredicted RBP9.57□□□□□ -0.88
HDDC3-204ENST00000559834 BTBD1Q9H0C5 482 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 TMEM245Q9H330 911 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 OSGEPQ9NPF4 335 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 CNGB3Q9NQW8 809 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 STOML2Q9UJZ1 356 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 TSPAN16Q9UKR8 245 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 NCKAP1Q9Y2A7 1128 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 CEP295Q9C0D2 2601 aa9.57□□□□□ -0.88
HDDC3-204ENST00000559834 A0A1B0GVT2 93 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 A0A1W2PQ27 194 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 A0A1W2PQ64 194 aa9.56□□□□□ -0.88
HDDC3-204ENST00000559834 IRAK2O43187 625 aa9.56□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms