RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 NBEAQ8NFP9 2946 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 PRAMEF33A0A0G2JMD5 474 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 A0A1W2PS29 197 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 GOLGA6CA6NDK9 693 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 GOLGA6BA6NDN3 693 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 SNAP23O00161 211 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 SEPT4O43236 478 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 SUV39H1O43463 412 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 PRAMEF10O60809 474 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 VPS4BO75351 444 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 CHEK2O96017 543 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 GNAI2P04899 355 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 HOXC6P09630 235 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 GOLGA6DP0CG33 693 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 EIF2S2P20042 333 aaKnown RBP6.85□□□□□ -1.31
RTF1-204ENST00000558117 SEC24CP53992 1094 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 RPS7P62081 194 aaKnown RBP6.85□□□□□ -1.31
RTF1-204ENST00000558117 POU6F2P78424 691 aaPredicted RBP6.85□□□□□ -1.31
RTF1-204ENST00000558117 SIGLEC14Q08ET2 396 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 ERCC6LQ2NKX8 1250 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 GFOD2Q3B7J2 385 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 CD300EQ496F6 205 aaPredicted RBP6.85□□□□□ -1.31
RTF1-204ENST00000558117 EMC10Q5UCC4 262 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 KIAA0319LQ8IZA0 1049 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 GDPD5Q8WTR4 605 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 LINC00476Q8WZB0 136 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 MTFMTQ96DP5 389 aaKnown RBP6.85□□□□□ -1.31
RTF1-204ENST00000558117 TMEM60Q9H2L4 133 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 SYBUQ9NX95 663 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 GOLGA6AQ9NYA3 693 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 C11orf21Q9P2W6 132 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 DBF4Q9UBU7 674 aaPredicted RBP6.85□□□□□ -1.31
RTF1-204ENST00000558117 FAM50BQ9Y247 325 aa6.85□□□□□ -1.31
RTF1-204ENST00000558117 ZBTB32Q9Y2Y4 487 aaPredicted RBP6.85□□□□□ -1.31
RTF1-204ENST00000558117 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.85□□□□□ -1.31
RTF1-204ENST00000558117 TEP1Q99973 2627 aaKnown RBP6.85□□□□□ -1.31
RTF1-204ENST00000558117 PTPRFP10586 1907 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 LOC102724159A0A0B4J2E5 919 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 M0QYG6 137 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 HTATSF1O43719 755 aaKnown RBP6.84□□□□□ -1.31
RTF1-204ENST00000558117 DNAJB5O75953 348 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 KITP10721 976 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 CYP2C18P33260 490 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 TOB1P50616 345 aaPredicted RBP6.84□□□□□ -1.31
RTF1-204ENST00000558117 ATXN1P54253 815 aaKnown RBP6.84□□□□□ -1.31
RTF1-204ENST00000558117 BOP1Q14137 746 aaKnown RBP6.84□□□□□ -1.31
RTF1-204ENST00000558117 PWP2Q15269 919 aaKnown RBP6.84□□□□□ -1.31
RTF1-204ENST00000558117 SP5Q6BEB4 398 aaPredicted RBP6.84□□□□□ -1.31
RTF1-204ENST00000558117 APOBEC3HQ6NTF7 200 aaKnown RBP6.84□□□□□ -1.31
RTF1-204ENST00000558117 PCSK4Q6UW60 755 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 TMPRSS9Q7Z410 1059 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 POC1BQ8TC44 478 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 SSH3Q8TE77 659 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 PNISRQ8TF01 805 aaKnown RBP6.84□□□□□ -1.31
RTF1-204ENST00000558117 FAM151AQ8WW52 585 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 SLC9A6Q92581 669 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 SMOC2Q9H3U7 446 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 FRMD4AQ9P2Q2 1039 aaPredicted RBP6.84□□□□□ -1.31
RTF1-204ENST00000558117 L1RE1Q9UN81 338 aa6.84□□□□□ -1.31
RTF1-204ENST00000558117 DSPP15924 2871 aaKnown RBP6.84□□□□□ -1.31
RTF1-204ENST00000558117 ESRRBO95718 433 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 PDGFBP01127 241 aaPredicted RBP6.83□□□□□ -1.32
RTF1-204ENST00000558117 CHRM3P20309 590 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 GATA3P23771 443 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 PRKAR2BP31323 418 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 KCNJ5P48544 419 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 CDK7P50613 346 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 ANXA11P50995 505 aaKnown RBP6.83□□□□□ -1.32
RTF1-204ENST00000558117 DMWDQ09019 674 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 DYRK1AQ13627 763 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 GALEQ14376 348 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 SMN1Q16637 294 aaKnown RBP6.83□□□□□ -1.32
RTF1-204ENST00000558117 TAF2Q6P1X5 1199 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 Q6ZNX1 250 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 MAEAQ7L5Y9 396 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 PPP1R32Q7Z5V6 425 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 FAM46DQ8NEK8 389 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 SNX19Q92543 992 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 AIFM2Q9BRQ8 373 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 CNPPD1Q9BV87 410 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 ANKRD2Q9GZV1 360 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 INTS13Q9NVM9 706 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 KCTD5Q9NXV2 234 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 TMOD2Q9NZR1 351 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 LRIT1Q9P2V4 623 aa6.83□□□□□ -1.32
RTF1-204ENST00000558117 EPN1Q9Y6I3 576 aaPredicted RBP6.83□□□□□ -1.32
RTF1-204ENST00000558117 ANKRD17O75179 2603 aaKnown RBP6.83□□□□□ -1.32
RTF1-204ENST00000558117 MAST3O60307 1309 aa6.82□□□□□ -1.32
RTF1-204ENST00000558117 FRMPD2Q68DX3 1309 aaPredicted RBP6.82□□□□□ -1.32
RTF1-204ENST00000558117 IGF2RP11717 2491 aa6.82□□□□□ -1.32
RTF1-204ENST00000558117 CAPN8A6NHC0 703 aa6.82□□□□□ -1.32
RTF1-204ENST00000558117 PROZP22891 400 aa6.82□□□□□ -1.32
RTF1-204ENST00000558117 GBX1Q14549 363 aa6.82□□□□□ -1.32
RTF1-204ENST00000558117 CNN3Q15417 329 aaKnown RBP6.82□□□□□ -1.32
RTF1-204ENST00000558117 ZNF804AQ7Z570 1209 aa6.82□□□□□ -1.32
RTF1-204ENST00000558117 TMEM105Q8N8V8 129 aa6.82□□□□□ -1.32
RTF1-204ENST00000558117 FAM156AQ8NDB6 213 aa6.82□□□□□ -1.32
RTF1-204ENST00000558117 ZG16BQ96DA0 208 aa6.82□□□□□ -1.32
RTF1-204ENST00000558117 CNNM1Q9NRU3 951 aa6.82□□□□□ -1.32
RTF1-204ENST00000558117 ZNHIT2Q9UHR6 403 aa6.82□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms