RNA–Protein interactions for RNA: ENST00000557433.5

SHMT2-231, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 1,904 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-231ENST00000557433 GTF2IRD1Q9UHL9 959 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 CDH22Q9UJ99 828 aa16.78■□□□□ 0.28
SHMT2-231ENST00000557433 MX2P20592 715 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 GARSP41250 739 aaKnown RBP16.77■□□□□ 0.28
SHMT2-231ENST00000557433 IDH3AP50213 366 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 SLC25A3Q00325 362 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 CCNIQ14094 377 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 C15orf59Q2T9L4 293 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-231ENST00000557433 CCDC153Q494R4 210 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 CFAP157Q5JU67 520 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 SYCP2LQ5T4T6 812 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 DPY19L2Q6NUT2 758 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 SLC26A7Q8TE54 656 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 ZNF778Q96MU6 729 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 SNRNP25Q9BV90 132 aaKnown RBP16.77■□□□□ 0.28
SHMT2-231ENST00000557433 NFKBIZQ9BYH8 718 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 CDT1Q9H211 546 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 Q9H521 79 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 C6orf203Q9P0P8 240 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-231ENST00000557433 BCAP29Q9UHQ4 241 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 EMCNQ9ULC0 261 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 CDY2AQ9Y6F7 541 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 CDY1Q9Y6F8 540 aa16.77■□□□□ 0.28
SHMT2-231ENST00000557433 H2AFYO75367 372 aaKnown RBP16.76■□□□□ 0.27
SHMT2-231ENST00000557433 USP1O94782 785 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 METTL18O95568 372 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 APBA3O96018 575 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 MCF2P10911 925 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 VCLP18206 1134 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 PTPRAP18433 802 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 EDNRBP24530 442 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 TCF7P36402 384 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-231ENST00000557433 CXCL9Q07325 125 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 LSAMPQ13449 338 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 DPYSL2Q16555 572 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 ANKRD20A4Q4UJ75 823 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 SH3PXD2AQ5TCZ1 1133 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 PDPK2PQ6A1A2 396 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 SCYL2Q6P3W7 929 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 PACS1Q6VY07 963 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 ZCCHC23Q6ZST2 131 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 FBXW8Q8N3Y1 598 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 GDPD5Q8WTR4 605 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 SREK1Q8WXA9 508 aaKnown RBP16.76■□□□□ 0.27
SHMT2-231ENST00000557433 STON2Q8WXE9 905 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 DDX50Q9BQ39 737 aaKnown RBP16.76■□□□□ 0.27
SHMT2-231ENST00000557433 ADAM28Q9UKQ2 775 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 ARHGAP26Q9UNA1 814 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 SF3B1O75533 1304 aaKnown RBP eCLIP16.76■□□□□ 0.275e-8■■■■■ 37.4
SHMT2-231ENST00000557433 LGR5O75473 907 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 PROCP04070 461 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 CXCL8P10145 99 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 PGAM1P18669 254 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 CYP2F1P24903 491 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 ABCE1P61221 599 aaKnown RBP16.76■□□□□ 0.27
SHMT2-231ENST00000557433 SLC6A3Q01959 620 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 MAP7Q14244 749 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 PCLAFQ15004 111 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 TMEM132AQ24JP5 1023 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 LRRC8BQ6P9F7 803 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 PLPPR4Q7Z2D5 763 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 CATSPER1Q8NEC5 780 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 CXorf38Q8TB03 319 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 FERMT1Q9BQL6 677 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 RTKNQ9BST9 563 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 NGRNQ9NPE2 291 aaKnown RBP16.76■□□□□ 0.27
SHMT2-231ENST00000557433 XPNPEP3Q9NQH7 507 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 PRMT7Q9NVM4 692 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-231ENST00000557433 HMGXB4Q9UGU5 601 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 PRPF19Q9UMS4 504 aaKnown RBP16.76■□□□□ 0.27
SHMT2-231ENST00000557433 POMPQ9Y244 141 aa16.76■□□□□ 0.27
SHMT2-231ENST00000557433 ANK1P16157 1881 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 SCN4AP35499 1836 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 MEI4A8MW99 385 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 ITM2AO43736 263 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 ATP9BO43861 1147 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 OPHN1O60890 802 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 ALDOAP04075 364 aaKnown RBP16.75■□□□□ 0.27
SHMT2-231ENST00000557433 ITGB3P05106 788 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 NFICP08651 508 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 RPS12P25398 132 aaKnown RBP16.75■□□□□ 0.27
SHMT2-231ENST00000557433 SCNN1AP37088 669 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 PTPN9P43378 593 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 CHN2P52757 468 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 HK2P52789 917 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 HMGCS2P54868 508 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 RPL10AP62906 217 aaKnown RBP16.75■□□□□ 0.27
SHMT2-231ENST00000557433 POU5F1BQ06416 359 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 LAMB3Q13751 1172 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 PDE1CQ14123 709 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-231ENST00000557433 CDO1Q16878 200 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 MMEL1Q495T6 779 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 HEATR6Q6AI08 1181 aaKnown RBP16.75■□□□□ 0.27
SHMT2-231ENST00000557433 OLFML1Q6UWY5 402 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 ARHGAP22Q7Z5H3 698 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 NT5DC4Q86YG4 428 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 SLC25A41Q8N5S1 370 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 ICA1LQ8NDH6 482 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 UBA3Q8TBC4 463 aa16.75■□□□□ 0.27
SHMT2-231ENST00000557433 PYDC1Q8WXC3 89 aa16.75■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms