RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 CXCL10P02778 98 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 NCAM1P13591 858 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 BDNFP23560 247 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 MAGEA4P43358 317 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 MAGEA11P43364 429 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 MMP13P45452 471 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 HIF1AQ16665 826 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 SLC45A4Q5BKX6 768 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 FAM131BQ86XD5 332 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 OR10T2Q8NGX3 314 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 OR2W6PQ8NHA6 318 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 SLC7A14Q8TBB6 771 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 PRCCQ92733 491 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-229ENST00000557348 C8orf48Q96LL4 319 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 DEFB118Q96PH6 123 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 ZNF317Q96PQ6 595 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-229ENST00000557348 KCTD15Q96SI1 283 aaPredicted RBP13.08□□□□□ -0.32
SHMT2-229ENST00000557348 KLC2Q9H0B6 622 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 FBXO44Q9H4M3 255 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 HAUS2Q9NVX0 235 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 GPATCH2LQ9NWQ4 482 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 ADAM28Q9UKQ2 775 aa13.08□□□□□ -0.32
SHMT2-229ENST00000557348 ANKRD33BA6NCL7 494 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 YJEFN3A6XGL0 299 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 H7C4K7 107 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 ALOX15BO15296 676 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 SPAG6O75602 509 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 ALDH2P05091 517 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 USP17L7P0C7H9 530 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 CCL5P13501 91 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 TFE3P19532 575 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-229ENST00000557348 IGFBP6P24592 240 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-229ENST00000557348 HPDP32754 393 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-229ENST00000557348 RPL22P35268 128 aaKnown RBP13.07□□□□□ -0.32
SHMT2-229ENST00000557348 ADRA1BP35368 520 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 CHKAP35790 457 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 NDUFV1P49821 464 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 SARNPP82979 210 aaKnown RBP13.07□□□□□ -0.32
SHMT2-229ENST00000557348 NR1H3Q13133 447 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 CA9Q16790 459 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 BRMS1LQ5PSV4 323 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 C1orf228Q6PIY5 440 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 ZNF280BQ86YH2 543 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 UNC45BQ8IWX7 931 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 CCDC185Q8N715 623 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 NAT8LQ8N9F0 302 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 FAM71DQ8N9W8 422 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 HASPINQ8TF76 798 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 RNF139Q8WU17 664 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 C2orf15Q8WU43 125 aaKnown RBP13.07□□□□□ -0.32
SHMT2-229ENST00000557348 QKIQ96PU8 341 aaKnown RBP eCLIP13.07□□□□□ -0.32
SHMT2-229ENST00000557348 KCNK16Q96T55 309 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 EPAS1Q99814 870 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 RNF208Q9H0X6 261 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 COMMD8Q9NX08 183 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 MTMR10Q9NXD2 777 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 NINJ2Q9NZG7 142 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 SAE1Q9UBE0 346 aaPredicted RBP13.07□□□□□ -0.32
SHMT2-229ENST00000557348 FETUBQ9UGM5 382 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 FBXW11Q9UKB1 542 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 PCDHB5Q9Y5E4 795 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 HEY1Q9Y5J3 304 aa13.07□□□□□ -0.32
SHMT2-229ENST00000557348 KLHL33A6NCF5 533 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 EEF2KO00418 725 aaKnown RBP13.06□□□□□ -0.32
SHMT2-229ENST00000557348 NRP1O14786 923 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 KCNN4O15554 427 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 CDH16O75309 829 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 GCATO75600 419 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 ATP5HO75947 161 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 NEBLO76041 1014 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 SERPINB6P35237 376 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 RFC2P35250 354 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 MAGEA6P43360 314 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 CXCR3P49682 368 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 MTA1Q13330 715 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 PAFAH1B3Q15102 231 aaKnown RBP13.06□□□□□ -0.32
SHMT2-229ENST00000557348 PDK1Q15118 436 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 RASA2Q15283 850 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 CCDC142Q17RM4 750 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 RAB6CQ53S08 254 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 OTUD1Q5VV17 481 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-229ENST00000557348 HEATR6Q6AI08 1181 aaKnown RBP13.06□□□□□ -0.32
SHMT2-229ENST00000557348 ZC3H18Q86VM9 953 aaKnown RBP13.06□□□□□ -0.32
SHMT2-229ENST00000557348 LRRC43Q8N309 656 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 ATP11CQ8NB49 1132 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 TFB1MQ8WVM0 346 aaKnown RBP13.06□□□□□ -0.32
SHMT2-229ENST00000557348 CPT1BQ92523 772 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 CEP295NLQ96MC4 621 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 CASD1Q96PB1 797 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 RAB6CQ9H0N0 254 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 HIPK3Q9H422 1215 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 SAYSD1Q9NPB0 183 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 DDIT4Q9NX09 232 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 NAALADL1Q9UQQ1 740 aa13.06□□□□□ -0.32
SHMT2-229ENST00000557348 EPB41L3Q9Y2J2 1087 aaPredicted RBP13.06□□□□□ -0.32
SHMT2-229ENST00000557348 E7ESA3 106 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 MTSS1O43312 755 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 ACSL3O95573 720 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 ITGB1P05556 798 aa13.05□□□□□ -0.32
SHMT2-229ENST00000557348 ZSCAN5DPP0CG00 497 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms