RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 SLC25A52Q3SY17 297 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 DNAJC24Q6P3W2 148 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 TMC6Q7Z403 805 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 C12orf40Q86WS4 652 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 ETFBKMTQ8IXQ9 262 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 FAM217AQ8IXS0 508 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 MCOLN2Q8IZK6 566 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 SYNPOQ8N3V7 929 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 NAT16Q8N8M0 369 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 DTWD2Q8NBA8 298 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 OR8K1Q8NGG5 319 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 BHMTQ93088 406 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 VCPIP1Q96JH7 1222 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 PNKPQ96T60 521 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 NPY6RQ99463 290 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 DNAJC7Q99615 494 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 DDX50Q9BQ39 737 aaKnown RBP14.12□□□□□ -0.15
SHMT2-228ENST00000557302 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP14.12□□□□□ -0.15
SHMT2-228ENST00000557302 SELENOOQ9BVL4 669 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 CHRDQ9H2X0 955 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 FBRSL1Q9HCM7 1045 aaKnown RBP14.12□□□□□ -0.15
SHMT2-228ENST00000557302 RBM12Q9NTZ6 932 aaKnown RBP14.12□□□□□ -0.15
SHMT2-228ENST00000557302 SLTMQ9NWH9 1034 aaKnown RBP eCLIP14.12□□□□□ -0.15
SHMT2-228ENST00000557302 DEC1Q9P2X7 70 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 SLC12A6Q9UHW9 1150 aa14.12□□□□□ -0.15
SHMT2-228ENST00000557302 CACNG3O60359 315 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 TULP3O75386 442 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 EGFP01133 1207 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 PENKP01210 267 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-228ENST00000557302 APODP05090 189 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 PLEKP08567 350 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-228ENST00000557302 KRT3P12035 628 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 ABCB4P21439 1286 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 ZNF75DP51815 510 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 KDSRQ06136 332 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 PPP2R5DQ14738 602 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 FBXO43Q4G163 708 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 PREPLQ4J6C6 727 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-228ENST00000557302 MPPE1Q53F39 396 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 OTUD1Q5VV17 481 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-228ENST00000557302 FYB2Q5VWT5 728 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 GRAMD4Q6IC98 578 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 SND1Q7KZF4 910 aaKnown RBP eCLIP14.11□□□□□ -0.15
SHMT2-228ENST00000557302 DRC7Q8IY82 874 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 EMC1Q8N766 993 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 ATP6V0D2Q8N8Y2 350 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 DDI1Q8WTU0 396 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 NT5C3BQ969T7 300 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 PGAP3Q96FM1 320 aaPredicted RBP14.11□□□□□ -0.15
SHMT2-228ENST00000557302 BTN2A3PQ96KV6 586 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 TBCBQ99426 244 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 PRRX2Q99811 253 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 IER2Q9BTL4 223 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 ARHGEF4Q9NR80 690 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 DNAJC17Q9NVM6 304 aaKnown RBP14.11□□□□□ -0.15
SHMT2-228ENST00000557302 TMEM51Q9NW97 253 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 ZNHIT6Q9NWK9 470 aaKnown RBP14.11□□□□□ -0.15
SHMT2-228ENST00000557302 PLK2Q9NYY3 685 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 ADAMTS1Q9UHI8 967 aa14.11□□□□□ -0.15
SHMT2-228ENST00000557302 GOLGA6L7A0A1B0GV03 622 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 C2CD4BA6NLJ0 364 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 SIGLEC16A6NMB1 481 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 GALR2O43603 387 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-228ENST00000557302 TSPAN3O60637 253 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 MFAP3LO75121 409 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 RTN2O75298 545 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 KAT7O95251 611 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 GJB6O95452 261 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 F9P00740 461 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 FTLP02792 175 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-228ENST00000557302 PDGFRAP16234 1089 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 TFE3P19532 575 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-228ENST00000557302 RRM1P23921 792 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 SDC4P31431 198 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 GRIA2P42262 883 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 DEUP1Q05D60 604 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 MTA1Q13330 715 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 FAM133BQ5BKY9 247 aaKnown RBP14.1□□□□□ -0.15
SHMT2-228ENST00000557302 NADSYN1Q6IA69 706 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 TRNP1Q6NT89 227 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 CNGA4Q8IV77 575 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 CCDC26Q8TAB7 109 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 JOSD2Q8TAC2 188 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 RXFP2Q8WXD0 754 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 TMA16Q96EY4 203 aaKnown RBP14.1□□□□□ -0.15
SHMT2-228ENST00000557302 MRFAP1L1Q96HT8 127 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 CFAP57Q96MR6 1250 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 IRX2Q9BZI1 471 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-228ENST00000557302 PIGVQ9NUD9 493 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 SPATA6Q9NWH7 488 aaPredicted RBP14.1□□□□□ -0.15
SHMT2-228ENST00000557302 ARHGAP20Q9P2F6 1191 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 PAXBP1Q9Y5B6 917 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 KMT2EQ8IZD2 1858 aa14.1□□□□□ -0.15
SHMT2-228ENST00000557302 MIA3Q5JRA6 1907 aa14.09□□□□□ -0.15
SHMT2-228ENST00000557302 MUC6Q6W4X9 2439 aa14.09□□□□□ -0.15
SHMT2-228ENST00000557302 TCRBV5S1A1TA0A578 114 aa14.09□□□□□ -0.15
SHMT2-228ENST00000557302 TYW5A2RUC4 315 aaKnown RBP14.09□□□□□ -0.15
SHMT2-228ENST00000557302 ANKRD62A6NC57 917 aa14.09□□□□□ -0.15
SHMT2-228ENST00000557302 KCNU1A8MYU2 1149 aa14.09□□□□□ -0.15
SHMT2-228ENST00000557302 AKR1B15C9JRZ8 316 aaPredicted RBP14.09□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms