RNA–Protein interactions for RNA: ENST00000556867.1

TDP1-216, Transcript of tyrosyl-DNA phosphodiesterase 1, humanhuman

TSL 2

Gene TDP1, Length 748 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TDP1-216ENST00000556867 ARID5AQ03989 594 aa23.77■■□□□ 1.4
TDP1-216ENST00000556867 HSF5Q4G112 596 aaPredicted RBP23.77■■□□□ 1.4
TDP1-216ENST00000556867 MPPE1Q53F39 396 aa23.77■■□□□ 1.4
TDP1-216ENST00000556867 TTYH3Q9C0H2 523 aa23.77■■□□□ 1.4
TDP1-216ENST00000556867 ANTXRLA6NF34 631 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 MMP8P22894 467 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 NOS2P35228 1153 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 C2orf27AQ580R0 203 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 FAM133BQ5BKY9 247 aaKnown RBP23.76■■□□□ 1.39
TDP1-216ENST00000556867 C10orf76Q5T2E6 689 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 LRSAM1Q6UWE0 723 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 DDI1Q8WTU0 396 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 PCDHB18PQ96TA0 734 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 SEMA4AQ9H3S1 761 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 TSPY26PQ9H489 355 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 FAM204AQ9H8W3 233 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 SLC8A2Q9UPR5 921 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 SLC27A6Q9Y2P4 619 aa23.76■■□□□ 1.39
TDP1-216ENST00000556867 MYO15AQ9UKN7 3530 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 LILRB5O75023 590 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 APOEP02649 317 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 UNGP13051 313 aaPredicted RBP23.75■■□□□ 1.39
TDP1-216ENST00000556867 HOXD9P28356 352 aaPredicted RBP23.75■■□□□ 1.39
TDP1-216ENST00000556867 PBX1P40424 430 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 MATKP42679 507 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 UBASH3AP57075 661 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 CENPCQ03188 943 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 DMC1Q14565 340 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 ZC3H12AQ5D1E8 599 aaKnown RBP23.75■■□□□ 1.39
TDP1-216ENST00000556867 FIGNQ5HY92 759 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 FAM102AQ5T9C2 384 aaPredicted RBP23.75■■□□□ 1.39
TDP1-216ENST00000556867 NADSYN1Q6IA69 706 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 KCNV2Q8TDN2 545 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 DDX50Q9BQ39 737 aaKnown RBP23.75■■□□□ 1.39
TDP1-216ENST00000556867 SLC2A11Q9BYW1 496 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 EDEM3Q9BZQ6 932 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 DDIT4Q9NX09 232 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 RRN3Q9NYV6 651 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 MMP17Q9ULZ9 603 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 STARD13Q9Y3M8 1113 aa23.75■■□□□ 1.39
TDP1-216ENST00000556867 FAM170AA1A519 330 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 LRRC53A6NM62 1247 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 TSPAN3O60637 253 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 SLC6A4P31645 630 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 GBP1P32455 592 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 CLEC16AQ2KHT3 1053 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 C2CD6Q53TS8 623 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 MPP7Q5T2T1 576 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 PIK3R6Q5UE93 754 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 RNF43Q68DV7 783 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 MMS22LQ6ZRQ5 1243 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 IRF2BP2Q7Z5L9 587 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 IL17RCQ8NAC3 791 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 ATRIPQ8WXE1 791 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 TMA16Q96EY4 203 aaKnown RBP23.74■■□□□ 1.39
TDP1-216ENST00000556867 AGPAT1Q99943 283 aa23.74■■□□□ 1.39
TDP1-216ENST00000556867 POLR3BQ9NW08 1133 aaPredicted RBP23.74■■□□□ 1.39
TDP1-216ENST00000556867 SLTMQ9NWH9 1034 aaKnown RBP eCLIP23.74■■□□□ 1.39
TDP1-216ENST00000556867 GOLGA6L7A0A1B0GV03 622 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 PRRT4C9JH25 899 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 SLC2A3P11169 496 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 TIE1P35590 1138 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 DMWDQ09019 674 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 EMC10Q5UCC4 262 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 OTUD1Q5VV17 481 aaPredicted RBP23.73■■□□□ 1.39
TDP1-216ENST00000556867 RFWD3Q6PCD5 774 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 ARCQ7LC44 396 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 CAMKK1Q8N5S9 505 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 ALLCQ8N6M5 410 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 SLC30A5Q8TAD4 765 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 NKD2Q969F2 451 aaPredicted RBP23.73■■□□□ 1.39
TDP1-216ENST00000556867 NT5C3BQ969T7 300 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 BTN2A3PQ96KV6 586 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 NPY6RQ99463 290 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 SYT11Q9BT88 431 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 FASTKD2Q9NYY8 710 aaKnown RBP eCLIP23.73■■□□□ 1.39
TDP1-216ENST00000556867 STAP1Q9ULZ2 295 aa23.73■■□□□ 1.39
TDP1-216ENST00000556867 ZFHX2Q9C0A1 2572 aaPredicted RBP23.73■■□□□ 1.39
TDP1-216ENST00000556867 CCDC163A0A0D9SF12 145 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 GOLGA8SH3BPF8 625 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 KLF8O95600 359 aaPredicted RBP23.72■■□□□ 1.39
TDP1-216ENST00000556867 MOCS2O96007 188 aaPredicted RBP23.72■■□□□ 1.39
TDP1-216ENST00000556867 HOXC13P31276 330 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 CCR1P32246 355 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 NSFP46459 744 aaKnown RBP23.72■■□□□ 1.39
TDP1-216ENST00000556867 FNTBP49356 437 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 SGSHP51688 502 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 RNASE9P60153 205 aaKnown RBP23.72■■□□□ 1.39
TDP1-216ENST00000556867 PTP4A2Q12974 167 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 TRMT11Q7Z4G4 463 aaKnown RBP23.72■■□□□ 1.39
TDP1-216ENST00000556867 LONP2Q86WA8 852 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 PHF13Q86YI8 300 aaPredicted RBP23.72■■□□□ 1.39
TDP1-216ENST00000556867 CCDC33Q8N5R6 958 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 ZNF513Q8N8E2 541 aaPredicted RBP23.72■■□□□ 1.39
TDP1-216ENST00000556867 ATP6V0D2Q8N8Y2 350 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 TXNDC5Q8NBS9 432 aaKnown RBP23.72■■□□□ 1.39
TDP1-216ENST00000556867 PRICKLE1Q96MT3 831 aaPredicted RBP23.72■■□□□ 1.39
TDP1-216ENST00000556867 C11orf70Q9BRQ4 267 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 NUP58Q9BVL2 599 aa23.72■■□□□ 1.39
TDP1-216ENST00000556867 NUCKS1Q9H1E3 243 aaKnown RBP23.72■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms