RNA–Protein interactions for RNA: ENST00000553128.5

VPS29-211, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 449 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-211ENST00000553128 C21orf59P57076 290 aa13.56□□□□□ -0.24
VPS29-211ENST00000553128 TBC1D25Q3MII6 688 aa13.56□□□□□ -0.24
VPS29-211ENST00000553128 KLHDC10Q6PID8 442 aa13.56□□□□□ -0.24
VPS29-211ENST00000553128 CLEC20AQ6ZU45 233 aa13.56□□□□□ -0.24
VPS29-211ENST00000553128 ZC3H3Q8IXZ2 948 aaKnown RBP13.56□□□□□ -0.24
VPS29-211ENST00000553128 TNIP3Q96KP6 325 aa13.56□□□□□ -0.24
VPS29-211ENST00000553128 ACE2Q9BYF1 805 aaPredicted RBP13.56□□□□□ -0.24
VPS29-211ENST00000553128 PRSS16Q9NQE7 514 aa13.56□□□□□ -0.24
VPS29-211ENST00000553128 CLIC4Q9Y696 253 aa13.56□□□□□ -0.24
VPS29-211ENST00000553128 MYH10P35580 1976 aa13.56□□□□□ -0.24
VPS29-211ENST00000553128 TP53BP1Q12888 1972 aaPredicted RBP13.56□□□□□ -0.24
VPS29-211ENST00000553128 COL6A6A6NMZ7 2263 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 FAM47DPA6NHR8 397 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 B8ZZF3 427 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 C7P10643 843 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 ABCB4P21439 1286 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 ATICP31939 592 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 RACK1P63244 317 aaKnown RBP13.55□□□□□ -0.24
VPS29-211ENST00000553128 KCNC4Q03721 635 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 BNIP3Q12983 259 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 EIF4HQ15056 248 aaKnown RBP13.55□□□□□ -0.24
VPS29-211ENST00000553128 ZNF699Q32M78 642 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 FNDC3BQ53EP0 1204 aaKnown RBP13.55□□□□□ -0.24
VPS29-211ENST00000553128 ARHGAP40Q5TG30 622 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 DENND1CQ8IV53 801 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 SYAP1Q96A49 352 aaPredicted RBP13.55□□□□□ -0.24
VPS29-211ENST00000553128 LGMNQ99538 433 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 MTG2Q9H4K7 406 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 KIAA1586Q9HCI6 787 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 AGPAT3Q9NRZ7 376 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 CCDC39Q9UFE4 941 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 SERGEFQ9UGK8 458 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 RASAL2Q9UJF2 1139 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 FBXO2Q9UK22 296 aaPredicted RBP13.55□□□□□ -0.24
VPS29-211ENST00000553128 NAGPAQ9UK23 515 aa13.55□□□□□ -0.24
VPS29-211ENST00000553128 A0A1W2PPC4 97 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 CAPN8A6NHC0 703 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 DFNA5O60443 496 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 VNN1O95497 513 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 BMP15O95972 392 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 FAM200BP0CF97 657 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 GLDCP23378 1020 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 EPHA8P29322 1005 aaPredicted RBP13.54□□□□□ -0.24
VPS29-211ENST00000553128 HLA-FP30511 346 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 ACTN2P35609 894 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 CHKAP35790 457 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 NDST1P52848 882 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 INSM1Q01101 510 aaPredicted RBP13.54□□□□□ -0.24
VPS29-211ENST00000553128 EFEMP1Q12805 493 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 ZNF667Q5HYK9 610 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 KIAA0895LQ68EN5 471 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 DDI1Q8WTU0 396 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 TWNKQ96RR1 684 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 VRTNQ9H8Y1 702 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 KIF3AQ9Y496 699 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 PCDHB1Q9Y5F3 818 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 BOD1L1Q8NFC6 3051 aa13.54□□□□□ -0.24
VPS29-211ENST00000553128 A0A1W2PR77 199 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 PHACTR2O75167 634 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 CLSTN1O94985 981 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 WISP1O95388 367 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 DNTTP04053 509 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 CDK4P11802 303 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 HOXD9P28356 352 aaPredicted RBP13.53□□□□□ -0.24
VPS29-211ENST00000553128 KIF11P52732 1056 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 RHDQ02161 417 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 ARID5AQ03989 594 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 KCNJ12Q14500 433 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 BMT2Q1RMZ1 405 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 KDM7AQ6ZMT4 941 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 EPM2AIP1Q7L775 607 aaPredicted RBP13.53□□□□□ -0.24
VPS29-211ENST00000553128 KANSL1Q7Z3B3 1105 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 ADIPOR2Q86V24 386 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 CRYBG2Q8N1P7 616 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 DCBLD1Q8N8Z6 715 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 TTC9Q92623 222 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 WBP1Q96G27 269 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 SGK2Q9HBY8 427 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 CLCA2Q9UQC9 943 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 ZNF510Q9Y2H8 683 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 SPTA1P02549 2419 aa13.53□□□□□ -0.24
VPS29-211ENST00000553128 TIMM44O43615 452 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 SLC28A2O43868 658 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 C6P13671 934 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 GALCP54803 685 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 SRSF1Q07955 248 aaKnown RBP eCLIP13.52□□□□□ -0.25
VPS29-211ENST00000553128 BIRC3Q13489 604 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 NCOA4Q13772 614 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 PKDCCQ504Y2 493 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 SFMBT2Q5VUG0 894 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 SPOPLQ6IQ16 392 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 NCEH1Q6PIU2 408 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 CHST9Q7L1S5 443 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 NELFCDQ8IXH7 590 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 CCDC65Q8IXS2 484 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 XXYLT1Q8NBI6 393 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 ZNF248Q8NDW4 579 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 ZNF507Q8TCN5 953 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 RFFLQ8WZ73 363 aa13.52□□□□□ -0.25
VPS29-211ENST00000553128 HIC2Q96JB3 615 aa13.52□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms