RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 SMAD1Q15797 465 aaKnown RBP11.06□□□□□ -0.64
VPS29-208ENST00000550267 LYPD4Q6UWN0 246 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 DHRS13Q6UX07 377 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 TMPRSS6Q8IU80 811 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 ZMIZ2Q8NF64 920 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 C1orf216Q8TAB5 229 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 SIPA1Q96FS4 1042 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 CGRRF1Q99675 332 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 UTP3Q9NQZ2 479 aaKnown RBP eCLIP11.06□□□□□ -0.64
VPS29-208ENST00000550267 PANK4Q9NVE7 773 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 COMMD8Q9NX08 183 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 SNX11Q9Y5W9 270 aa11.06□□□□□ -0.64
VPS29-208ENST00000550267 KCNK3O14649 394 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 MDM4O15151 490 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 ATXN7O15265 892 aaPredicted RBP11.05□□□□□ -0.64
VPS29-208ENST00000550267 TNFSF14O43557 240 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 BEST1O76090 585 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 PLA2G2AP14555 144 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 OXTRP30559 389 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 ATP5C1P36542 298 aaKnown RBP11.05□□□□□ -0.64
VPS29-208ENST00000550267 COPAP53621 1224 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 MYL6P60660 151 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 GEN1Q17RS7 908 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 KIF19Q2TAC6 998 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 FAM124AQ86V42 546 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 FUKQ8N0W3 1084 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 EPS8L1Q8TE68 723 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 SNX19Q92543 992 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 PRCCQ92733 491 aaPredicted RBP11.05□□□□□ -0.64
VPS29-208ENST00000550267 HPS3Q969F9 1004 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 CCDC127Q96BQ5 260 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 SMARCD1Q96GM5 515 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 SMOQ99835 787 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 NUP58Q9BVL2 599 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 XYLT2Q9H1B5 865 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 PRORYQ9H606 182 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 SMYD3Q9H7B4 428 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 TLR8Q9NR97 1041 aaKnown RBP11.05□□□□□ -0.64
VPS29-208ENST00000550267 KRT82Q9NSB4 513 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 OSER1Q9NX31 292 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 THAP10Q9P2Z0 257 aaPredicted RBP11.05□□□□□ -0.64
VPS29-208ENST00000550267 FBXO10Q9UK96 956 aa11.05□□□□□ -0.64
VPS29-208ENST00000550267 GON4LQ3T8J9 2241 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 SYNCRIPO60506 623 aaKnown RBP11.04□□□□□ -0.64
VPS29-208ENST00000550267 STAU1O95793 577 aaKnown RBP11.04□□□□□ -0.64
VPS29-208ENST00000550267 IGLV3-19P01714 112 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 ACADMP11310 421 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 HLA-EP13747 358 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 CCDC130P13994 396 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 ACO1P21399 889 aaKnown RBP11.04□□□□□ -0.64
VPS29-208ENST00000550267 PRKCHP24723 683 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 HOXD13P35453 343 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 GRK6P43250 576 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 AFF3P51826 1226 aaKnown RBP11.04□□□□□ -0.64
VPS29-208ENST00000550267 ZNF132P52740 706 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 MFAP3P55082 362 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 CLDN6P56747 220 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 MAP3K7CLP57077 242 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 RAB15P59190 212 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 GOLGA8FQ08AF8 430 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 GOLGA8DPQ0D2H9 430 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 TRPC3Q13507 836 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 ENPP2Q13822 863 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 ZNF234Q14588 700 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 PSMD6Q15008 389 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 SNRNP35Q16560 246 aaKnown RBP11.04□□□□□ -0.64
VPS29-208ENST00000550267 LAYNQ6UX15 382 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 ELMO3Q96BJ8 720 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 CLIC6Q96NY7 704 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 SDCBP2Q9H190 292 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 C6orf106Q9H6K1 298 aaPredicted RBP11.04□□□□□ -0.64
VPS29-208ENST00000550267 NMUR1Q9HB89 426 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 KIAA1586Q9HCI6 787 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 TM9SF3Q9HD45 589 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 FBXO2Q9UK22 296 aaPredicted RBP11.04□□□□□ -0.64
VPS29-208ENST00000550267 NUDT5Q9UKK9 219 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 ANKRD6Q9Y2G4 727 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 SLC27A6Q9Y2P4 619 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 RAI2Q9Y5P3 530 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 CLIC4Q9Y696 253 aa11.04□□□□□ -0.64
VPS29-208ENST00000550267 A0A087X0B3 334 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 CYSRT1A8MQ03 144 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 E9PAM4 449 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 H0Y8X5 98 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 TLX3O43711 291 aaPredicted RBP11.03□□□□□ -0.64
VPS29-208ENST00000550267 CELA2BP08218 269 aaPredicted RBP11.03□□□□□ -0.64
VPS29-208ENST00000550267 ATICP31939 592 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 TXLNAP40222 546 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 EIF2S3P41091 472 aaKnown RBP11.03□□□□□ -0.64
VPS29-208ENST00000550267 STAT6P42226 847 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 RNF144AP50876 292 aaPredicted RBP11.03□□□□□ -0.64
VPS29-208ENST00000550267 CCT8P50990 548 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 CYP2J2P51589 502 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 IL9RQ01113 521 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 CYP24A1Q07973 514 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 ORC1Q13415 861 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 SCARA5Q6ZMJ2 495 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 GPRIN1Q7Z2K8 1008 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 BRAPQ7Z569 592 aa11.03□□□□□ -0.64
VPS29-208ENST00000550267 ACOT1Q86TX2 421 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms