RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 GIPC2Q8TF65 315 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 PRCCQ92733 491 aaPredicted RBP15.42■□□□□ 0.06
CUX1-214ENST00000550008 DMAP1Q9NPF5 467 aaPredicted RBP15.42■□□□□ 0.06
CUX1-214ENST00000550008 GRHL1Q9NZI5 618 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 ADGRA2Q96PE1 1338 aa15.42■□□□□ 0.06
CUX1-214ENST00000550008 CCR1P32246 355 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 PTGIRP43119 386 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 NME5P56597 212 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 SLC45A4Q5BKX6 768 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 ANGPTL8Q6UXH0 198 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 PCDH18Q9HCL0 1135 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 DRG1Q9Y295 367 aaKnown RBP15.41■□□□□ 0.06
CUX1-214ENST00000550008 IPPQ9Y573 584 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 KAT6AQ92794 2004 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 NCF1BA6NI72 391 aaPredicted RBP15.41■□□□□ 0.06
CUX1-214ENST00000550008 NCF1CA8MVU1 366 aaPredicted RBP15.41■□□□□ 0.06
CUX1-214ENST00000550008 LMNAP02545 664 aaKnown RBP15.41■□□□□ 0.06
CUX1-214ENST00000550008 CYP1A1P04798 512 aaPredicted RBP15.41■□□□□ 0.06
CUX1-214ENST00000550008 ITGAVP06756 1048 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 NCF1P14598 390 aaPredicted RBP15.41■□□□□ 0.06
CUX1-214ENST00000550008 DARSP14868 501 aaKnown RBP15.41■□□□□ 0.06
CUX1-214ENST00000550008 CHRM3P20309 590 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 DRD4P21917 467 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 NOS2P35228 1153 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 CDKN2BP42772 138 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 PLIN5Q00G26 463 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 ZRANB3Q5FWF4 1079 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 LRRC8EQ6NSJ5 796 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 MSL3Q8N5Y2 521 aaKnown RBP15.41■□□□□ 0.06
CUX1-214ENST00000550008 A0A0G2JLL6 359 aaPredicted RBP15.41■□□□□ 0.06
CUX1-214ENST00000550008 GSTA4O15217 222 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 FAM155BO75949 473 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 CPA3P15088 417 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 ERCC2P18074 760 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 ACAP1Q15027 740 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 NBPF20Q3BBV1 942 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 C9orf57Q5W0N0 161 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 POLNQ7Z5Q5 900 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 PRRT2Q7Z6L0 340 aaPredicted RBP15.41■□□□□ 0.06
CUX1-214ENST00000550008 UNC93AQ86WB7 457 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 CKAP2Q8WWK9 683 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 FIZ1Q96SL8 496 aa15.41■□□□□ 0.06
CUX1-214ENST00000550008 GLTPD2A6NH11 291 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 DNAJC6O75061 913 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 HOXC6P09630 235 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 ELNP15502 786 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 LMO2P25791 158 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 RBBP7Q16576 425 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 TMEM63BQ5T3F8 832 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 PYROXD2Q8N2H3 581 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 TMEM130Q8N3G9 435 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 PCSK9Q8NBP7 692 aaKnown RBP15.4■□□□□ 0.06
CUX1-214ENST00000550008 TMEM169Q96HH4 297 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 SH3GL2Q99962 352 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 UTP6Q9NYH9 597 aaKnown RBP15.4■□□□□ 0.06
CUX1-214ENST00000550008 SLC30A1Q9Y6M5 507 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 SLC15A5A6NIM6 579 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 PTPN7P35236 360 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 SCNN1BP51168 640 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 NUP93Q8N1F7 819 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 RFWD2Q8NHY2 731 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 CRYGNQ8WXF5 182 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 PHF21BQ96EK2 531 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 BORCS6Q96GS4 357 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 NAT9Q9BTE0 207 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 RXFP1Q9HBX9 757 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 WDR70Q9NW82 654 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 TCRBV9S1A1TA0A576 114 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 TULP2O00295 520 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 HCRTO43612 131 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 C22orf31O95567 290 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 ATP4AP20648 1035 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 RCN1Q15293 331 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 ZDHHC17Q8IUH5 632 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 SHCBP1Q8NEM2 672 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 CLEC4CQ8WTT0 213 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 ZC3H15Q8WU90 426 aaKnown RBP15.4■□□□□ 0.06
CUX1-214ENST00000550008 MECRQ9BV79 373 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 MYLK2Q9H1R3 596 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 MOSPD1Q9UJG1 213 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 AURKCQ9UQB9 309 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 SUPT3HB4E1H0 165 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 NT5C1B-RDH14C9J2C7 533 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 CBX4O00257 560 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 SUPT3HO75486 399 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 OR4Q2P0C623 313 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 GDF10P55107 478 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 IMPG1Q17R60 797 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 SGO1Q5FBB7 561 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 ATP6V0D2Q8N8Y2 350 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 GLIS1Q8NBF1 620 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 SDCCAG3Q96C92 435 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 MAML3Q96JK9 1138 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 KDM4CQ9H3R0 1056 aa15.4■□□□□ 0.06
CUX1-214ENST00000550008 PPEF2O14830 753 aa15.39■□□□□ 0.05
CUX1-214ENST00000550008 AXLP30530 894 aa15.39■□□□□ 0.05
CUX1-214ENST00000550008 FLT3LGP49771 235 aa15.39■□□□□ 0.05
CUX1-214ENST00000550008 TRIP10Q15642 601 aa15.39■□□□□ 0.05
CUX1-214ENST00000550008 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.39■□□□□ 0.051e-12■■■□□ 16.9
CUX1-214ENST00000550008 LINC00523Q86TU6 105 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms