RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 SCYL2Q6P3W7 929 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 SYT10Q6XYQ8 523 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 CYP4V2Q6ZWL3 525 aaPredicted RBP16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 MIB1Q86YT6 1006 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 C12orf76Q8N812 135 aaPredicted RBP16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 MAB21L3Q8N8X9 362 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 ADAM32Q8TC27 787 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 SUSD6Q92537 303 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 ZFRQ96KR1 1074 aaKnown RBP16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 EPAS1Q99814 870 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 SNRNP25Q9BV90 132 aaKnown RBP16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 SLC46A2Q9BY10 475 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 ADAM33Q9BZ11 813 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 RNF38Q9H0F5 515 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 TKTL2Q9H0I9 626 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 GOLPH3Q9H4A6 298 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 SLITRK6Q9H5Y7 841 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 ZWILCHQ9H900 591 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 TDP1Q9NUW8 608 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 MTMR10Q9NXD2 777 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 CDH7Q9ULB5 785 aa16.61■□□□□ 0.25
PRPF40A-212ENST00000545856 E2F8A0AVK6 867 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 SLC9A3R1O14745 358 aaPredicted RBP16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 STC2O76061 302 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 TBX18O95935 607 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 TFE3P19532 575 aaPredicted RBP16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 IL1R2P27930 398 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 SMAD4Q13485 552 aaKnown RBP16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 TAZQ16635 292 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 ZC3H12AQ5D1E8 599 aaKnown RBP16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 SEL1L2Q5TEA6 688 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 TTC39BQ5VTQ0 682 aaPredicted RBP16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 HTR3DQ70Z44 454 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 NPAS3Q8IXF0 933 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 CELF5Q8N6W0 485 aaKnown RBP16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 MAIP1Q8WWC4 291 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 TCEAL4Q96EI5 215 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 GUCD1Q96NT3 240 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 UBE2ZQ9H832 354 aaPredicted RBP16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 STAU2Q9NUL3 570 aaKnown RBP eCLIP16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 CALCOCO1Q9P1Z2 691 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 PCSK1NQ9UHG2 260 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 FAM50BQ9Y247 325 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 CPQQ9Y646 472 aa16.6■□□□□ 0.25
PRPF40A-212ENST00000545856 FGF10O15520 208 aaPredicted RBP16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 MSI1O43347 362 aaKnown RBP16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 ZNF189O75820 626 aaPredicted RBP16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 ATP1A1P05023 1023 aaKnown RBP16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 CEBPBP17676 345 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 ARL4AP40617 200 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 USP4Q13107 963 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 SEMA3BQ13214 749 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 OTOP3Q7RTS5 596 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 FAM217AQ8IXS0 508 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 CPXM2Q8N436 756 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 CCDC185Q8N715 623 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 ARL14EPQ8N8R7 260 aaPredicted RBP16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 ZNF557Q8N988 423 aaPredicted RBP16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 MYLIPQ8WY64 445 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 SMARCD2Q92925 531 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 PEBP4Q96S96 227 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 OSBPL9Q96SU4 736 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 TBC1D14Q9P2M4 693 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 PPARGC1AQ9UBK2 798 aaKnown RBP16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 NUDT5Q9UKK9 219 aa16.59■□□□□ 0.25
PRPF40A-212ENST00000545856 SYNJ2BP-COX16A0A087WUM0 186 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 H3BRJ5 948 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 KCNK3O14649 394 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 ENC1O14682 589 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 ACSL4O60488 711 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 KRT1P04264 644 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 ZFXP17010 805 aaPredicted RBP16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 KDELR1P24390 212 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 HOXC13P31276 330 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 CHKAP35790 457 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 ARSEP51690 589 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 MLLT6P55198 1093 aaPredicted RBP16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 AMPD2Q01433 879 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 TFDP2Q14188 446 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 KRT81Q14533 505 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 CBX2Q14781 532 aaPredicted RBP16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 C5orf22Q49AR2 442 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 TFDP3Q5H9I0 405 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 ADGRF1Q5T601 910 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 LRRC31Q6UY01 552 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 Q6ZNB5 142 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 KCTD6Q8NC69 237 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 ALG3Q92685 438 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 KRT35Q92764 455 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 FGF13Q92913 245 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 FAF2Q96CS3 445 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 FAM161BQ96MY7 647 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 COX16Q9P0S2 106 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 SH3BP1Q9Y3L3 701 aa16.58■□□□□ 0.24
PRPF40A-212ENST00000545856 LRRD1A4D1F6 860 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 PAGE1O75459 146 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 ATXN1P54253 815 aaKnown RBP16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 CDH6P55285 790 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 NTHL1P78549 312 aa16.57■□□□□ 0.24
PRPF40A-212ENST00000545856 DLX2Q07687 328 aaPredicted RBP16.57■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 44.1 ms