RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 MTPAPQ9NVV4 582 aaKnown RBP eCLIP9.9□□□□□ -0.82
YBX3-215ENST00000544504 GMIPQ9P107 970 aa9.9□□□□□ -0.82
YBX3-215ENST00000544504 USP18Q9UMW8 372 aa9.9□□□□□ -0.82
YBX3-215ENST00000544504 CHD8Q9HCK8 2581 aa9.9□□□□□ -0.82
YBX3-215ENST00000544504 CLUHO75153 1309 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 STK25O00506 426 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 KCNK3O14649 394 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 ZNF197O14709 1029 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 URI1O94763 535 aaPredicted RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 ZRANB2O95218 330 aaKnown RBP eCLIP9.89□□□□□ -0.83
YBX3-215ENST00000544504 TRUB2O95900 331 aaKnown RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 ATP1A1P05023 1023 aaKnown RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 FYNP06241 537 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 SPATA31D3P0C874 917 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 RARGP13631 454 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 PTPN2P17706 415 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 DDX6P26196 483 aaKnown RBP eCLIP9.89□□□□□ -0.83
YBX3-215ENST00000544504 MIPP30301 263 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 ATP5C1P36542 298 aaKnown RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 PAFAH1B1P43034 410 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 COPS2P61201 443 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 USP46P62068 366 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 ATP11AP98196 1134 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 CKAP4Q07065 602 aaKnown RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 CDO1Q16878 200 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 WHAMMP3Q1A5X7 153 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 BRMS1LQ5PSV4 323 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 RARS2Q5T160 578 aaKnown RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 HECTD3Q5T447 861 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 ZFYVE27Q5T4F4 411 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 SEL1L2Q5TEA6 688 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 SPATA31D4Q6ZUB0 917 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 OTOP3Q7RTS5 596 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 VSIG1Q86XK7 387 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 RCOR2Q8IZ40 523 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 DCLK2Q8N568 766 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 GPR161Q8N6U8 529 aaKnown RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 MNS1Q8NEH6 495 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 CMASQ8NFW8 434 aaPredicted RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 EXD1Q8NHP7 514 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 GPR152Q8TDT2 470 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 MAIP1Q8WWC4 291 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 NDRG1Q92597 394 aaKnown RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 EDEM1Q92611 657 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 NTAN1Q96AB6 310 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 NACA2Q9H009 215 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 GOLPH3Q9H4A6 298 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 SFXN1Q9H9B4 322 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 PRDM16Q9HAZ2 1276 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 DDIT4Q9NX09 232 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.89□□□□□ -0.83
YBX3-215ENST00000544504 WNT16Q9UBV4 365 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 SLC12A6Q9UHW9 1150 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 DNMT3LQ9UJW3 386 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 NAALADL1Q9UQQ1 740 aa9.89□□□□□ -0.83
YBX3-215ENST00000544504 HBS1LQ9Y450 684 aaKnown RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 MTCL1Q9Y4B5 1905 aaKnown RBP9.89□□□□□ -0.83
YBX3-215ENST00000544504 BAHCC1Q9P281 2608 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 MYO16Q9Y6X6 1858 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 ZNF840PA6NDX5 716 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 ZNF487B1APH4 448 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 ENC1O14682 589 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 MDM4O15151 490 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 IRAK2O43187 625 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 TLR5O60602 858 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 PAPLNO95428 1278 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 IGLV3-25P01717 112 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 EPCAMP16422 314 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 CCR1P32246 355 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 CXCR3P49682 368 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 EPHA5P54756 1037 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 HDAC4P56524 1084 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 COG7P83436 770 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 RING1Q06587 406 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 PPP2R5DQ14738 602 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 PDK2Q15119 407 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 C15orf59Q2T9L4 293 aaPredicted RBP9.88□□□□□ -0.83
YBX3-215ENST00000544504 ARHGAP15Q53QZ3 475 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 C10orf120Q5SQS8 335 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 CCDC181Q5TID7 509 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 SYPL2Q5VXT5 272 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 TRNP1Q6NT89 227 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 SCYL2Q6P3W7 929 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 BNIPLQ7Z465 357 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 DQX1Q8TE96 717 aaKnown RBP9.88□□□□□ -0.83
YBX3-215ENST00000544504 RNF34Q969K3 372 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 OSBPL9Q96SU4 736 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 PRKD2Q9BZL6 878 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 KCNK12Q9HB15 430 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 NMUR1Q9HB89 426 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 SLTMQ9NWH9 1034 aaKnown RBP eCLIP9.88□□□□□ -0.83
YBX3-215ENST00000544504 MARCH2Q9P0N8 246 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 CDC23Q9UJX2 597 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 TLR6Q9Y2C9 796 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 GREB1Q4ZG55 1949 aa9.88□□□□□ -0.83
YBX3-215ENST00000544504 OTOGLQ3ZCN5 2332 aa9.87□□□□□ -0.83
YBX3-215ENST00000544504 ZNF638Q14966 1978 aaKnown RBP9.87□□□□□ -0.83
YBX3-215ENST00000544504 CCL16O15467 120 aa9.87□□□□□ -0.83
YBX3-215ENST00000544504 DDX3YO15523 660 aaKnown RBP9.87□□□□□ -0.83
YBX3-215ENST00000544504 APOEP02649 317 aa9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms