RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 RABEP1Q15276 862 aa6.93□□□□□ -1.3
YBX3-210ENST00000540975 TRIM71Q2Q1W2 868 aaKnown RBP6.93□□□□□ -1.3
YBX3-210ENST00000540975 PAPD7Q5XG87 772 aaKnown RBP6.93□□□□□ -1.3
YBX3-210ENST00000540975 C16orf89Q6UX73 402 aa6.93□□□□□ -1.3
YBX3-210ENST00000540975 TOGARAM2Q6ZUX3 1019 aa6.93□□□□□ -1.3
YBX3-210ENST00000540975 MORC1Q86VD1 984 aa6.93□□□□□ -1.3
YBX3-210ENST00000540975 C16orf52Q8NHV5 167 aa6.93□□□□□ -1.3
YBX3-210ENST00000540975 CELF1Q92879 486 aaKnown RBP6.93□□□□□ -1.3
YBX3-210ENST00000540975 FCRL5Q96RD9 977 aa6.93□□□□□ -1.3
YBX3-210ENST00000540975 SENP7Q9BQF6 1050 aa6.93□□□□□ -1.3
YBX3-210ENST00000540975 ELOVL1Q9BW60 279 aa6.93□□□□□ -1.3
YBX3-210ENST00000540975 TMEM184CQ9NVA4 438 aa6.93□□□□□ -1.3
YBX3-210ENST00000540975 PCDHB7Q9Y5E2 793 aa6.93□□□□□ -1.3
YBX3-210ENST00000540975 ADAM10O14672 748 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 PLAUP00749 431 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 CTSAP10619 480 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 NPPBP16860 134 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 NDUFS1P28331 727 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 STAT6P42226 847 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 STARD3Q14849 445 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 PXDC1Q5TGL8 231 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 DEF8Q6ZN54 512 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 NOL8Q76FK4 1167 aaKnown RBP6.92□□□□□ -1.3
YBX3-210ENST00000540975 KRT27Q7Z3Y8 459 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 PIGOQ8TEQ8 1089 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 SLC22A17Q8WUG5 538 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 IGFBPL1Q8WX77 278 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 PIGKQ92643 395 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 PMM1Q92871 262 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 ZNF845Q96IR2 970 aaPredicted RBP6.92□□□□□ -1.3
YBX3-210ENST00000540975 FBXO28Q9NVF7 368 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 SLC52A1Q9NWF4 448 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 TRNAU1APQ9NX07 287 aaKnown RBP6.92□□□□□ -1.3
YBX3-210ENST00000540975 ELOVL5Q9NYP7 299 aa6.92□□□□□ -1.3
YBX3-210ENST00000540975 GXYLT2A0PJZ3 443 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 TLR2O60603 784 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 CER1O95813 267 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 FGBP02675 491 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 CD63P08962 238 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 SETSIPP0DME0 302 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 THBS4P35443 961 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 IL6STP40189 918 aaPredicted RBP6.91□□□□□ -1.3
YBX3-210ENST00000540975 HTR3AP46098 478 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 RPS13P62277 151 aaKnown RBP6.91□□□□□ -1.3
YBX3-210ENST00000540975 HDAC1Q13547 482 aaPredicted RBP6.91□□□□□ -1.3
YBX3-210ENST00000540975 SLC9C1Q4G0N8 1177 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 C10orf25Q5T742 122 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 RBM44Q6ZP01 1051 aaKnown RBP6.91□□□□□ -1.3
YBX3-210ENST00000540975 RFX6Q8HWS3 928 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 LAS2Q8IYD9 372 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 NANOGP1Q8N7R0 232 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 BCAS4Q8TDM0 211 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 NPIPB3Q92617 1050 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 MCRS1Q96EZ8 462 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 PRPF18Q99633 342 aaKnown RBP6.91□□□□□ -1.3
YBX3-210ENST00000540975 UBE2J1Q9Y385 318 aaPredicted RBP6.91□□□□□ -1.3
YBX3-210ENST00000540975 SPATA31A5Q5VU36 1347 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 SPATA31A7Q8IWB4 1347 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 ZNF521Q96K83 1311 aa6.91□□□□□ -1.3
YBX3-210ENST00000540975 GOLGA6L3A6NEY3 463 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 FFAR2O15552 330 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 ENO1P06733 434 aaKnown RBP6.9□□□□□ -1.3
YBX3-210ENST00000540975 HOXA7P31268 230 aaPredicted RBP6.9□□□□□ -1.3
YBX3-210ENST00000540975 SLC8A1P32418 973 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 PTGER1P34995 402 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 ID2Q02363 134 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 CBFBQ13951 182 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 UBE4AQ14139 1066 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 WDR60Q8WVS4 1066 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 ASB12Q8WXK4 309 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 TRMT61AQ96FX7 289 aaKnown RBP6.9□□□□□ -1.3
YBX3-210ENST00000540975 WDR12Q9GZL7 423 aaKnown RBP6.9□□□□□ -1.3
YBX3-210ENST00000540975 KCNK9Q9NPC2 374 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 MTMR4Q9NYA4 1195 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 B3GNT3Q9Y2A9 372 aa6.9□□□□□ -1.3
YBX3-210ENST00000540975 SLC22A23A1A5C7 686 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 C2CD4BA6NLJ0 364 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 RPS6KB1P23443 525 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 CPA2P48052 419 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 ALDH18A1P54886 795 aaKnown RBP6.89□□□□□ -1.31
YBX3-210ENST00000540975 MTA1Q13330 715 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 SPARCL1Q14515 664 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 RBMS2Q15434 407 aaKnown RBP6.89□□□□□ -1.31
YBX3-210ENST00000540975 RINT1Q6NUQ1 792 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 GGT6Q6P531 493 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 SHC4Q6S5L8 630 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 UEVLDQ8IX04 471 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 NRSN1Q8IZ57 195 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 ZNF527Q8NB42 609 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 WIPF2Q8TF74 440 aaPredicted RBP6.89□□□□□ -1.31
YBX3-210ENST00000540975 SLC39A13Q96H72 371 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 FAR2Q96K12 515 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 MAGED2Q9UNF1 606 aaPredicted RBP6.89□□□□□ -1.31
YBX3-210ENST00000540975 LRCH1Q9Y2L9 728 aa6.89□□□□□ -1.31
YBX3-210ENST00000540975 ZMYM2Q9UBW7 1377 aa6.88□□□□□ -1.31
YBX3-210ENST00000540975 LOC105369274A0A096LPK9 316 aa6.88□□□□□ -1.31
YBX3-210ENST00000540975 LOC102723532A0A0G2JNH3 316 aa6.88□□□□□ -1.31
YBX3-210ENST00000540975 CCDC194A0A1B0GVG4 234 aa6.88□□□□□ -1.31
YBX3-210ENST00000540975 AQP12BA6NM10 295 aa6.88□□□□□ -1.31
YBX3-210ENST00000540975 DNPH1O43598 174 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 74.4 ms