RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 ARHGEF4Q9NR80 690 aa17.46■□□□□ 0.39
USP28-208ENST00000540438 DDX43Q9NXZ2 648 aaKnown RBP17.46■□□□□ 0.39
USP28-208ENST00000540438 ARL4AP40617 200 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 TAF6P49848 677 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 SCNN1GP51170 649 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 ARFIP2P53365 341 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 ALDH18A1P54886 795 aaKnown RBP17.45■□□□□ 0.38
USP28-208ENST00000540438 PEX6Q13608 980 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 FYB2Q5VWT5 728 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 PAQR9Q6ZVX9 377 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 SLC26A11Q86WA9 606 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 TNS4Q8IZW8 715 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 OR52K1Q8NGK4 314 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 HTR3CQ8WXA8 447 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 N4BP2L2Q92802 583 aaPredicted RBP17.45■□□□□ 0.38
USP28-208ENST00000540438 SLC7A6OSQ96CW6 309 aaPredicted RBP17.45■□□□□ 0.38
USP28-208ENST00000540438 CLPTM1LQ96KA5 538 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 SIGLEC10Q96LC7 697 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 TMEM209Q96SK2 561 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 EBF4Q9BQW3 602 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 UBQLN1Q9UMX0 589 aaKnown RBP17.45■□□□□ 0.38
USP28-208ENST00000540438 EFR3BQ9Y2G0 817 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 GLTPD2A6NH11 291 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 SKAP2O75563 359 aaPredicted RBP17.45■□□□□ 0.38
USP28-208ENST00000540438 ALDH3A1P30838 453 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 BRCC3P46736 316 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 BCAT1P54687 386 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 GRB14Q14449 540 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 SDHAF4Q5VUM1 108 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 SLC9A4Q6AI14 798 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 IL31Q6EBC2 164 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 RSPH3Q86UC2 560 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 ZWINTO95229 277 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 ENO1P06733 434 aaKnown RBP17.45■□□□□ 0.38
USP28-208ENST00000540438 PSEN2P49810 448 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 PDK2Q15119 407 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 SLC45A4Q5BKX6 768 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 GNASQ5JWF2 1037 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 RNF43Q68DV7 783 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 SHCBP1Q8NEM2 672 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 MIPEPQ99797 713 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 NMUR2Q9GZQ4 415 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 ATXN3LQ9H3M9 355 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 ARHGEF3Q9NR81 526 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 SYBUQ9NX95 663 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 PPME1Q9Y570 386 aa17.45■□□□□ 0.38
USP28-208ENST00000540438 A0A0G2JMZ2 1700 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 LRRC37A2A6NM11 1700 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 APOEP02649 317 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 HUNKP57058 714 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 DEUP1Q05D60 604 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 TRIM32Q13049 653 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 DCAF4L1Q3SXM0 396 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 CLNKQ7Z7G1 428 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 PPP1R14CQ8TAE6 165 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 RNF139Q8WU17 664 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 RNF34Q969K3 372 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 RILPQ96NA2 401 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 AGAP2Q99490 1192 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 CRTAC1Q9NQ79 661 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 MEI4A8MW99 385 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 PIRO00625 290 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 RFPL1O75677 317 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 AP1G2O75843 785 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 PTPN1P18031 435 aaKnown RBP17.44■□□□□ 0.38
USP28-208ENST00000540438 VWA5B1Q5TIE3 1220 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 DSTYKQ6XUX3 929 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 ASRGL1Q7L266 308 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 SPATA6LQ8N4H0 392 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 TFB1MQ8WVM0 346 aaKnown RBP17.44■□□□□ 0.38
USP28-208ENST00000540438 ATP2A3Q93084 1043 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 APOPT1Q96IL0 206 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 DHRS4Q9BTZ2 278 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 VPS11Q9H270 941 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 DDIT4Q9NX09 232 aa17.44■□□□□ 0.38
USP28-208ENST00000540438 PPARGC1AQ9UBK2 798 aaKnown RBP17.44■□□□□ 0.38
USP28-208ENST00000540438 ITM2AO43736 263 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 STRNO43815 780 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 DNAJC6O75061 913 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 GSTA1P08263 222 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 OR4Q2P0C623 313 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 TROVE2P10155 538 aaKnown RBP eCLIP17.43■□□□□ 0.38
USP28-208ENST00000540438 MAP2K2P36507 400 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 PGFP49763 221 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 OTUD1Q5VV17 481 aaPredicted RBP17.43■□□□□ 0.38
USP28-208ENST00000540438 CLEC20AQ6ZU45 233 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 ZNF410Q86VK4 478 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 IFNLR1Q8IU57 520 aaPredicted RBP17.43■□□□□ 0.38
USP28-208ENST00000540438 NUDCD3Q8IVD9 361 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 DNAAF3Q8N9W5 541 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 FAM13CQ8NE31 585 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 ACVR1CQ8NER5 493 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 SCAMP5Q8TAC9 235 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 TRIM55Q9BYV6 548 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 ARHGAP39Q9C0H5 1083 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 KCNK13Q9HB14 408 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 KLHL8Q9P2G9 620 aaPredicted RBP17.43■□□□□ 0.38
USP28-208ENST00000540438 CHADO15335 359 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 C1QAP02745 245 aa17.43■□□□□ 0.38
USP28-208ENST00000540438 SNRPAP09012 282 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms